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COMMD6 (COMM domain containing 6)

Identity

Alias_symbol (synonym)Acrg
Other alias
HGNC (Hugo) COMMD6
LocusID (NCBI) 170622
Atlas_Id 62016
Location 13q22.2  [Link to chromosome band 13q22]
Location_base_pair Starts at 76099355 and ends at 76112008 bp from pter ( according to hg19-Feb_2009)
Fusion genes
(updated 2016)
COMMD6 (13q22.2) / COMMD6 (13q22.2)TBC1D4 (13q22.2) / COMMD6 (13q22.2)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)COMMD6   24015
Cards
Entrez_Gene (NCBI)COMMD6  170622  COMM domain containing 6
AliasesAcrg
GeneCards (Weizmann)COMMD6
Ensembl hg19 (Hinxton)ENSG00000188243 [Gene_View]  chr13:76099355-76112008 [Contig_View]  COMMD6 [Vega]
Ensembl hg38 (Hinxton)ENSG00000188243 [Gene_View]  chr13:76099355-76112008 [Contig_View]  COMMD6 [Vega]
ICGC DataPortalENSG00000188243
TCGA cBioPortalCOMMD6
AceView (NCBI)COMMD6
Genatlas (Paris)COMMD6
WikiGenes170622
SOURCE (Princeton)COMMD6
Genetics Home Reference (NIH)COMMD6
Genomic and cartography
GoldenPath hg19 (UCSC)COMMD6  -     chr13:76099355-76112008 -  13q22.2   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)COMMD6  -     13q22.2   [Description]    (hg38-Dec_2013)
EnsemblCOMMD6 - 13q22.2 [CytoView hg19]  COMMD6 - 13q22.2 [CytoView hg38]
Mapping of homologs : NCBICOMMD6 [Mapview hg19]  COMMD6 [Mapview hg38]
OMIM612377   
Gene and transcription
Genbank (Entrez)AA425275 AF086081 AF169971 AK000009 AW516002
RefSeq transcript (Entrez)NM_001287392 NM_001287393 NM_001287394 NM_203495 NM_203497
RefSeq genomic (Entrez)NC_000013 NC_018924 NT_024524 NW_004929388
Consensus coding sequences : CCDS (NCBI)COMMD6
Cluster EST : UnigeneHs.713055 [ NCBI ]
CGAP (NCI)Hs.713055
Alternative Splicing GalleryENSG00000188243
Gene ExpressionCOMMD6 [ NCBI-GEO ]   COMMD6 [ EBI - ARRAY_EXPRESS ]   COMMD6 [ SEEK ]   COMMD6 [ MEM ]
Gene Expression Viewer (FireBrowse)COMMD6 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)170622
GTEX Portal (Tissue expression)COMMD6
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ7Z4G1   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ7Z4G1  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ7Z4G1
Splice isoforms : SwissVarQ7Z4G1
PhosPhoSitePlusQ7Z4G1
Domaine pattern : Prosite (Expaxy)COMM (PS51269)   
Domains : Interpro (EBI)COMM    HCaRG   
Domain families : Pfam (Sanger)HCaRG (PF07258)   
Domain families : Pfam (NCBI)pfam07258   
Conserved Domain (NCBI)COMMD6
DMDM Disease mutations170622
Blocks (Seattle)COMMD6
SuperfamilyQ7Z4G1
Human Protein AtlasENSG00000188243
Peptide AtlasQ7Z4G1
HPRD13084
IPIIPI00375957   IPI00409561   IPI00889756   IPI00892530   
Protein Interaction databases
DIP (DOE-UCLA)Q7Z4G1
IntAct (EBI)Q7Z4G1
FunCoupENSG00000188243
BioGRIDCOMMD6
STRING (EMBL)COMMD6
ZODIACCOMMD6
Ontologies - Pathways
QuickGOQ7Z4G1
Ontology : AmiGOprotein binding  nucleus  cytoplasm  transcription, DNA-templated  negative regulation of NF-kappaB transcription factor activity  NF-kappaB binding  
Ontology : EGO-EBIprotein binding  nucleus  cytoplasm  transcription, DNA-templated  negative regulation of NF-kappaB transcription factor activity  NF-kappaB binding  
NDEx NetworkCOMMD6
Atlas of Cancer Signalling NetworkCOMMD6
Wikipedia pathwaysCOMMD6
Orthology - Evolution
OrthoDB170622
GeneTree (enSembl)ENSG00000188243
Phylogenetic Trees/Animal Genes : TreeFamCOMMD6
HOVERGENQ7Z4G1
HOGENOMQ7Z4G1
Homologs : HomoloGeneCOMMD6
Homology/Alignments : Family Browser (UCSC)COMMD6
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerCOMMD6 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)COMMD6
dbVarCOMMD6
ClinVarCOMMD6
1000_GenomesCOMMD6 
Exome Variant ServerCOMMD6
ExAC (Exome Aggregation Consortium)COMMD6 (select the gene name)
Genetic variants : HAPMAP170622
Genomic Variants (DGV)COMMD6 [DGVbeta]
DECIPHER (Syndromes)13:76099355-76112008  ENSG00000188243
CONAN: Copy Number AnalysisCOMMD6 
Mutations
ICGC Data PortalCOMMD6 
TCGA Data PortalCOMMD6 
Broad Tumor PortalCOMMD6
OASIS PortalCOMMD6 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICCOMMD6  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDCOMMD6
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch COMMD6
DgiDB (Drug Gene Interaction Database)COMMD6
DoCM (Curated mutations)COMMD6 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)COMMD6 (select a term)
intoGenCOMMD6
Cancer3DCOMMD6(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM612377   
Orphanet
MedgenCOMMD6
Genetic Testing Registry COMMD6
NextProtQ7Z4G1 [Medical]
TSGene170622
GENETestsCOMMD6
Huge Navigator COMMD6 [HugePedia]
snp3D : Map Gene to Disease170622
BioCentury BCIQCOMMD6
ClinGenCOMMD6
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD170622
Chemical/Pharm GKB GenePA134906013
Clinical trialCOMMD6
Miscellaneous
canSAR (ICR)COMMD6 (select the gene name)
Probes
Litterature
PubMed16 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineCOMMD6
EVEXCOMMD6
GoPubMedCOMMD6
iHOPCOMMD6
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

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indexed on : Tue Mar 14 12:00:04 CET 2017

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