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COMMD6 (COMM domain containing 6)

Identity

Alias (NCBI)Acrg
HGNC (Hugo) COMMD6
HGNC Alias symbAcrg
LocusID (NCBI) 170622
Atlas_Id 62016
Location 13q22.2  [Link to chromosome band 13q22]
Location_base_pair Starts at 75525214 and ends at 75537872 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
COMMD6 (13q22.2) / COMMD6 (13q22.2)TBC1D4 (13q22.2) / COMMD6 (13q22.2)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 



External links

 

Nomenclature
HGNC (Hugo)COMMD6   24015
Cards
Entrez_Gene (NCBI)COMMD6    COMM domain containing 6
AliasesAcrg
GeneCards (Weizmann)COMMD6
Ensembl hg19 (Hinxton)ENSG00000188243 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000188243 [Gene_View]  ENSG00000188243 [Sequence]  chr13:75525214-75537872 [Contig_View]  COMMD6 [Vega]
ICGC DataPortalENSG00000188243
TCGA cBioPortalCOMMD6
AceView (NCBI)COMMD6
Genatlas (Paris)COMMD6
SOURCE (Princeton)COMMD6
Genetics Home Reference (NIH)COMMD6
Genomic and cartography
GoldenPath hg38 (UCSC)COMMD6  -     chr13:75525214-75537872 -  13q22.2   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)COMMD6  -     13q22.2   [Description]    (hg19-Feb_2009)
GoldenPathCOMMD6 - 13q22.2 [CytoView hg19]  COMMD6 - 13q22.2 [CytoView hg38]
ImmunoBaseENSG00000188243
Genome Data Viewer NCBICOMMD6 [Mapview hg19]  
OMIM612377   
Gene and transcription
Genbank (Entrez)AA425275 AF086081 AF169971 AK000009 AW516002
RefSeq transcript (Entrez)NM_001287392 NM_001287393 NM_001287394 NM_203495 NM_203497
Consensus coding sequences : CCDS (NCBI)COMMD6
Gene ExpressionCOMMD6 [ NCBI-GEO ]   COMMD6 [ EBI - ARRAY_EXPRESS ]   COMMD6 [ SEEK ]   COMMD6 [ MEM ]
Gene Expression Viewer (FireBrowse)COMMD6 [ Firebrowse - Broad ]
GenevisibleExpression of COMMD6 in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)170622
GTEX Portal (Tissue expression)COMMD6
Human Protein AtlasENSG00000188243-COMMD6 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ7Z4G1   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ7Z4G1  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ7Z4G1
PhosPhoSitePlusQ7Z4G1
Domaine pattern : Prosite (Expaxy)COMM (PS51269)   
Domains : Interpro (EBI)COMM   
Domain families : Pfam (Sanger)COMM_domain (PF07258)   
Domain families : Pfam (NCBI)pfam07258   
Conserved Domain (NCBI)COMMD6
SuperfamilyQ7Z4G1
AlphaFold pdb e-kbQ7Z4G1   
Human Protein Atlas [tissue]ENSG00000188243-COMMD6 [tissue]
HPRD13084
Protein Interaction databases
DIP (DOE-UCLA)Q7Z4G1
IntAct (EBI)Q7Z4G1
BioGRIDCOMMD6
STRING (EMBL)COMMD6
ZODIACCOMMD6
Ontologies - Pathways
QuickGOQ7Z4G1
Ontology : AmiGOprotein binding  nucleus  cytoplasm  negative regulation of NF-kappaB transcription factor activity  negative regulation of NF-kappaB transcription factor activity  NF-kappaB binding  NF-kappaB binding  
Ontology : EGO-EBIprotein binding  nucleus  cytoplasm  negative regulation of NF-kappaB transcription factor activity  negative regulation of NF-kappaB transcription factor activity  NF-kappaB binding  NF-kappaB binding  
NDEx NetworkCOMMD6
Atlas of Cancer Signalling NetworkCOMMD6
Wikipedia pathwaysCOMMD6
Orthology - Evolution
OrthoDB170622
GeneTree (enSembl)ENSG00000188243
Phylogenetic Trees/Animal Genes : TreeFamCOMMD6
Homologs : HomoloGeneCOMMD6
Homology/Alignments : Family Browser (UCSC)COMMD6
Gene fusions - Rearrangements
Fusion : QuiverCOMMD6
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerCOMMD6 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)COMMD6
dbVarCOMMD6
ClinVarCOMMD6
MonarchCOMMD6
1000_GenomesCOMMD6 
Exome Variant ServerCOMMD6
GNOMAD BrowserENSG00000188243
Varsome BrowserCOMMD6
ACMGCOMMD6 variants
VarityQ7Z4G1
Genomic Variants (DGV)COMMD6 [DGVbeta]
DECIPHERCOMMD6 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisCOMMD6 
Mutations
ICGC Data PortalCOMMD6 
TCGA Data PortalCOMMD6 
Broad Tumor PortalCOMMD6
OASIS PortalCOMMD6 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICCOMMD6  [overview]  [genome browser]  [tissue]  [distribution]  
Somatic Mutations in Cancer : COSMIC3DCOMMD6
Mutations and Diseases : HGMDCOMMD6
LOVD (Leiden Open Variation Database)[gene] [transcripts] [variants]
BioMutaCOMMD6
DgiDB (Drug Gene Interaction Database)COMMD6
DoCM (Curated mutations)COMMD6
CIViC (Clinical Interpretations of Variants in Cancer)COMMD6
Cancer3DCOMMD6
Impact of mutations[PolyPhen2] [Provean] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM612377   
Orphanet
DisGeNETCOMMD6
MedgenCOMMD6
Genetic Testing Registry COMMD6
NextProtQ7Z4G1 [Medical]
GENETestsCOMMD6
Target ValidationCOMMD6
Huge Navigator COMMD6 [HugePedia]
ClinGenCOMMD6
Clinical trials, drugs, therapy
MyCancerGenomeCOMMD6
Protein Interactions : CTDCOMMD6
Pharm GKB GenePA134906013
PharosQ7Z4G1
Clinical trialCOMMD6
Miscellaneous
canSAR (ICR)COMMD6
HarmonizomeCOMMD6
DataMed IndexCOMMD6
Probes
Litterature
PubMed27 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
EVEXCOMMD6
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

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indexed on : Mon Oct 4 15:46:36 CEST 2021

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