Atlas of Genetics and Cytogenetics in Oncology and Haematology

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COMMD7 (COMM domain containing 7)

Identity

Other namesC20orf92
dJ1085F17.3
HGNC (Hugo) COMMD7
LocusID (NCBI) 149951
Location 20q11.21
Location_base_pair Starts at 31290493 and ends at 31331814 bp from pter ( according to hg19-Feb_2009)
Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 

External links

Nomenclature
HGNC (Hugo)COMMD7   16223
Entrez_Gene (NCBI)COMMD7  149951  COMM domain containing 7
Cards
GeneCards (Weizmann)COMMD7
Ensembl (Hinxton)ENSG00000149600 [Gene_View]  chr20:31290493-31331814 [Contig_View]  COMMD7 [Vega]
AceView (NCBI)COMMD7
Genatlas (Paris)COMMD7
SOURCE (Stanford)NM_001099339 NM_053041
Genomic and cartography
GoldenPath (UCSC)COMMD7  -  20q11.21   chr20:31290493-31331814 -  20q11.21   [Description]    (hg19-Feb_2009)
EnsemblCOMMD7 - 20q11.21 [CytoView]
Mapping of homologs : NCBICOMMD7 [Mapview]
Gene and transcription
Genbank (Entrez)AJ012490 AK027893 AK096307 AK097059 AY542162
RefSeq transcript (SRS)NM_001099339 NM_053041
RefSeq transcript (Entrez)NM_001099339 NM_053041
RefSeq genomic (SRS)AC_000152 NC_000020 NC_018931 NT_011362 NW_001838664 NW_004078102
RefSeq genomic (Entrez)AC_000152 NC_000020 NC_018931 NT_011362 NW_001838664 NW_004078102
Consensus coding sequences : CCDS (NCBI)COMMD7
Cluster EST : UnigeneHs.408427 [ SRS ] Hs.408427 [ NCBI ]
CGAP (NCI)Hs.408427
Alternative Splicing : Fast-db (Paris)GSHG0019114
Alternative Splicing GalleryENSG00000149600
Gene ExpressionCOMMD7 [ NCBI-GEO ]   COMMD7 [ EBI - ARRAY_EXPRESS ]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ86VX2 (SRS) Q86VX2 (Uniprot)
NextProtQ86VX2
With graphics : InterProQ86VX2
Splice isoforms : SwissVarQ86VX2(Swissvar)
Domaine pattern : Prosite (SRS)COMM (PS51269)   
Domaine pattern : Prosite (Expaxy)COMM (PS51269)   
Domains : Interpro (SRS)COMM    HCaRG   
Domains : Interpro (EBI)COMM    HCaRG   
Related proteins : CluSTrQ86VX2
Domain families : Pfam (SRS)HCaRG (PF07258)   
Domain families : Pfam (Sanger)HCaRG (PF07258)   
Domain families : Pfam (NCBI)pfam07258   
DMDM149951
Blocks (Seattle)Q86VX2
Human Protein AtlasENSG00000149600
HPRD13085
IPIIPI00743772   IPI00853293   
Protein Interaction databases
DIP (DOE-UCLA)Q86VX2
IntAct (EBI)Q86VX2
FunCoupENSG00000149600
REACTOMECOMMD7
Protein Interaction Database149951
BioGRIDCOMMD7
InParanoidQ86VX2
Interologous Interaction database Q86VX2
IntegromeDBCOMMD7
Polymorphism : SNP, mutations, diseases
SNP Single Nucleotide Polymorphism (NCBI)COMMD7
SNP (GeneSNP Utah)COMMD7
SNP : HGBaseCOMMD7
Genetic variants : HAPMAPCOMMD7
Somatic Mutations in Cancer : COSMICCOMMD7 
CONAN: Copy Number AnalysisCOMMD7 
Mutations and Diseases : HGMDCOMMD7
OMIM
GENETests
Disease Genetic AssociationCOMMD7
Huge Navigator COMMD7 [HugePedia]  COMMD7 [HugeCancerGEM]
Genomic VariantsCOMMD7  COMMD7 [DGVbeta]
snp3D : Map Gene to Disease149951
General knowledge
Homologs : HomoloGeneCOMMD7
Homology/Alignments : Family Browser (UCSC)COMMD7
Phylogenetic Trees/Animal Genes : TreeFamCOMMD7
Chemical/Protein Interactions : CTD149951
Chemical/Pharm GKB GenePA25799
Clinical trialCOMMD7
Cancer Resource (Charite)ENSG00000149600
Ontology : AmiGOprotein binding  cellular_component  negative regulation of NF-kappaB transcription factor activity  tumor necrosis factor-mediated signaling pathway  negative regulation of transcription, DNA-dependent  NF-kappaB binding  
Ontology : EGO-EBIprotein binding  cellular_component  negative regulation of NF-kappaB transcription factor activity  tumor necrosis factor-mediated signaling pathway  negative regulation of transcription, DNA-dependent  NF-kappaB binding  
Other databases
Probes
Litterature
PubMed10 Pubmed reference(s) in Entrez
PubGeneCOMMD7
iHOPCOMMD7
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

Contributor(s)

Written09-2002Dessen P, Le Minor S
Updated01-2013Dessen P

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Wed May 1 12:46:06 CEST 2013
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