Atlas of Genetics and Cytogenetics in Oncology and Haematology


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COMMD7 (COMM domain containing 7)

Identity

Other namesC20orf92
dJ1085F17.3
HGNC (Hugo) COMMD7
LocusID (NCBI) 149951
Location 20q11.21
Location_base_pair Starts at 31290493 and ends at 31331814 bp from pter ( according to hg19-Feb_2009)
Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 

External links

Nomenclature
HGNC (Hugo)COMMD7   16223
Cards
Entrez_Gene (NCBI)COMMD7  149951  COMM domain containing 7
GeneCards (Weizmann)COMMD7
Ensembl (Hinxton)ENSG00000149600 [Gene_View]  chr20:31290493-31331814 [Contig_View]  COMMD7 [Vega]
ICGC DataPortalENSG00000149600
cBioPortalCOMMD7
AceView (NCBI)COMMD7
Genatlas (Paris)COMMD7
WikiGenes149951
SOURCE (Princeton)NM_001099339 NM_053041
Genomic and cartography
GoldenPath (UCSC)COMMD7  -  20q11.21   chr20:31290493-31331814 -  20q11.21   [Description]    (hg19-Feb_2009)
EnsemblCOMMD7 - 20q11.21 [CytoView]
Mapping of homologs : NCBICOMMD7 [Mapview]
Gene and transcription
Genbank (Entrez)AJ012490 AK027893 AK096307 AK097059 AY542162
RefSeq transcript (Entrez)NM_001099339 NM_053041
RefSeq genomic (Entrez)AC_000152 NC_000020 NC_018931 NT_011362 NW_001838664 NW_004929418
Consensus coding sequences : CCDS (NCBI)COMMD7
Cluster EST : UnigeneHs.408427 [ NCBI ]
CGAP (NCI)Hs.408427
Alternative Splicing : Fast-db (Paris)GSHG0019114
Alternative Splicing GalleryENSG00000149600
Gene ExpressionCOMMD7 [ NCBI-GEO ]     COMMD7 [ SEEK ]   COMMD7 [ MEM ]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ86VX2 (Uniprot)
NextProtQ86VX2  [Medical]
With graphics : InterProQ86VX2
Splice isoforms : SwissVarQ86VX2 (Swissvar)
Domaine pattern : Prosite (Expaxy)COMM (PS51269)   
Domains : Interpro (EBI)COMM [organisation]   HCaRG [organisation]  
Related proteins : CluSTrQ86VX2
Domain families : Pfam (Sanger)HCaRG (PF07258)   
Domain families : Pfam (NCBI)pfam07258   
DMDM Disease mutations149951
Blocks (Seattle)Q86VX2
Human Protein AtlasENSG00000149600 [gene] [tissue] [antibody] [cell] [cancer]
Peptide AtlasQ86VX2
HPRD13085
IPIIPI00743772   IPI00853293   
Protein Interaction databases
DIP (DOE-UCLA)Q86VX2
IntAct (EBI)Q86VX2
FunCoupENSG00000149600
BioGRIDCOMMD7
InParanoidQ86VX2
Interologous Interaction database Q86VX2
IntegromeDBCOMMD7
STRING (EMBL)COMMD7
Ontologies - Pathways
Ontology : AmiGOprotein binding  negative regulation of NF-kappaB transcription factor activity  tumor necrosis factor-mediated signaling pathway  negative regulation of transcription, DNA-templated  NF-kappaB binding  extracellular vesicular exosome  
Ontology : EGO-EBIprotein binding  negative regulation of NF-kappaB transcription factor activity  tumor necrosis factor-mediated signaling pathway  negative regulation of transcription, DNA-templated  NF-kappaB binding  extracellular vesicular exosome  
Protein Interaction DatabaseCOMMD7
Wikipedia pathwaysCOMMD7
Gene fusion - rearrangments
Polymorphisms : SNP, mutations, diseases
SNP Single Nucleotide Polymorphism (NCBI)COMMD7
snp3D : Map Gene to Disease149951
SNP (GeneSNP Utah)COMMD7
SNP : HGBaseCOMMD7
Genetic variants : HAPMAPCOMMD7
Exome VariantCOMMD7
1000_GenomesCOMMD7 
ICGC programENSG00000149600 
Somatic Mutations in Cancer : COSMICCOMMD7 
CONAN: Copy Number AnalysisCOMMD7 
Mutations and Diseases : HGMDCOMMD7
Mutations and Diseases : intOGenCOMMD7
Genomic VariantsCOMMD7  COMMD7 [DGVbeta]
dbVarCOMMD7
ClinVarCOMMD7
Pred. of missensesPolyPhen-2  SIFT(SG)  SIFT(JCVI)  Align-GVGD  MutAssessor  Mutanalyser  
Pred. splicesGeneSplicer  Human Splicing Finder  MaxEntScan  
Diseases
OMIM
MedgenCOMMD7
GENETestsCOMMD7
Disease Genetic AssociationCOMMD7
Huge Navigator COMMD7 [HugePedia]  COMMD7 [HugeCancerGEM]
General knowledge
Homologs : HomoloGeneCOMMD7
Homology/Alignments : Family Browser (UCSC)COMMD7
Phylogenetic Trees/Animal Genes : TreeFamCOMMD7
Chemical/Protein Interactions : CTD149951
Chemical/Pharm GKB GenePA25799
Clinical trialCOMMD7
Cancer Resource (Charite)ENSG00000149600
Other databases
Probes
Litterature
PubMed11 Pubmed reference(s) in Entrez
CoreMineCOMMD7
iHOPCOMMD7
OncoSearchCOMMD7
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

Contributor(s)

Written09-2002Dessen P, Le Minor S
Updated12-2013Dessen P

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Mon Sep 22 18:45:34 CEST 2014

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