Atlas of Genetics and Cytogenetics in Oncology and Haematology


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COMMD7 (COMM domain containing 7)

Identity

Other namesC20orf92
dJ1085F17.3
HGNC (Hugo) COMMD7
LocusID (NCBI) 149951
Atlas_Id 50192
Location 20q11.21
Location_base_pair Starts at 31290493 and ends at 31331814 bp from pter ( according to hg19-Feb_2009)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 

External links

Nomenclature
HGNC (Hugo)COMMD7   16223
Cards
Entrez_Gene (NCBI)COMMD7  149951  COMM domain containing 7
GeneCards (Weizmann)COMMD7
Ensembl hg19 (Hinxton)ENSG00000149600 [Gene_View]  chr20:31290493-31331814 [Contig_View]  COMMD7 [Vega]
Ensembl hg38 (Hinxton)ENSG00000149600 [Gene_View]  chr20:31290493-31331814 [Contig_View]  COMMD7 [Vega]
ICGC DataPortalENSG00000149600
TCGA cBioPortalCOMMD7
AceView (NCBI)COMMD7
Genatlas (Paris)COMMD7
WikiGenes149951
SOURCE (Princeton)COMMD7
Genomic and cartography
GoldenPath hg19 (UCSC)COMMD7  -     chr20:31290493-31331814 -  20q11.21   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)COMMD7  -     20q11.21   [Description]    (hg38-Dec_2013)
EnsemblCOMMD7 - 20q11.21 [CytoView hg19]  COMMD7 - 20q11.21 [CytoView hg38]
Mapping of homologs : NCBICOMMD7 [Mapview hg19]  COMMD7 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AJ012490 AK027893 AK096307 AK097059 AY542162
RefSeq transcript (Entrez)NM_001099339 NM_053041
RefSeq genomic (Entrez)NC_000020 NC_018931 NT_011362 NW_004929418
Consensus coding sequences : CCDS (NCBI)COMMD7
Cluster EST : UnigeneHs.408427 [ NCBI ]
CGAP (NCI)Hs.408427
Alternative Splicing : Fast-db (Paris)GSHG0019114
Alternative Splicing GalleryENSG00000149600
Gene ExpressionCOMMD7 [ NCBI-GEO ]     COMMD7 [ SEEK ]   COMMD7 [ MEM ]
SOURCE (Princeton)Expression in : [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ86VX2 (Uniprot)
NextProtQ86VX2  [Medical]
With graphics : InterProQ86VX2
Splice isoforms : SwissVarQ86VX2 (Swissvar)
Domaine pattern : Prosite (Expaxy)COMM (PS51269)   
Domains : Interpro (EBI)COMM    HCaRG   
Related proteins : CluSTrQ86VX2
Domain families : Pfam (Sanger)HCaRG (PF07258)   
Domain families : Pfam (NCBI)pfam07258   
DMDM Disease mutations149951
Blocks (Seattle)Q86VX2
Human Protein AtlasENSG00000149600
Peptide AtlasQ86VX2
HPRD13085
IPIIPI00743772   IPI00853293   
Protein Interaction databases
DIP (DOE-UCLA)Q86VX2
IntAct (EBI)Q86VX2
FunCoupENSG00000149600
BioGRIDCOMMD7
IntegromeDBCOMMD7
STRING (EMBL)COMMD7
Ontologies - Pathways
QuickGOQ86VX2
Ontology : AmiGOprotein binding  transcription, DNA-templated  cytoplasmic membrane-bounded vesicle  negative regulation of NF-kappaB transcription factor activity  tumor necrosis factor-mediated signaling pathway  negative regulation of transcription, DNA-templated  NF-kappaB binding  extracellular exosome  
Ontology : EGO-EBIprotein binding  transcription, DNA-templated  cytoplasmic membrane-bounded vesicle  negative regulation of NF-kappaB transcription factor activity  tumor necrosis factor-mediated signaling pathway  negative regulation of transcription, DNA-templated  NF-kappaB binding  extracellular exosome  
Protein Interaction DatabaseCOMMD7
DoCM (Curated mutations)COMMD7
Wikipedia pathwaysCOMMD7
Gene fusion - Rearrangements
Gene fusion: TCGA
Polymorphisms : SNP, variants
NCBI Variation ViewerCOMMD7 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)COMMD7
dbVarCOMMD7
ClinVarCOMMD7
1000_GenomesCOMMD7 
Exome Variant ServerCOMMD7
SNP (GeneSNP Utah)COMMD7
SNP : HGBaseCOMMD7
Genetic variants : HAPMAPCOMMD7
Genomic Variants (DGV)COMMD7 [DGVbeta]
Mutations
ICGC Data PortalCOMMD7 
TCGA Data PortalCOMMD7 
Tumor PortalCOMMD7
Somatic Mutations in Cancer : COSMICCOMMD7 
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] 
Diseases
DECIPHER (Syndromes)20:31290493-31331814
CONAN: Copy Number AnalysisCOMMD7 
Mutations and Diseases : HGMDCOMMD7
OMIM
MedgenCOMMD7
NextProtQ86VX2 [Medical]
GENETestsCOMMD7
Disease Genetic AssociationCOMMD7
Huge Navigator COMMD7 [HugePedia]  COMMD7 [HugeCancerGEM]
snp3D : Map Gene to Disease149951
DGIdb (Drug Gene Interaction db)COMMD7
General knowledge
Homologs : HomoloGeneCOMMD7
Homology/Alignments : Family Browser (UCSC)COMMD7
Phylogenetic Trees/Animal Genes : TreeFamCOMMD7
Chemical/Protein Interactions : CTD149951
Chemical/Pharm GKB GenePA25799
Clinical trialCOMMD7
Cancer Resource (Charite)ENSG00000149600
Other databases
Probes
Litterature
PubMed12 Pubmed reference(s) in Entrez
CoreMineCOMMD7
GoPubMedCOMMD7
iHOPCOMMD7
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

Contributor(s)

Written09-2002Dessen P, Le Minor S
Updated02-2015Dessen P

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Mon Apr 13 14:14:42 CEST 2015

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