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COMMD8 (COMM domain containing 8)

Identity

Alias_symbol (synonym)FLJ20502
Other alias-
HGNC (Hugo) COMMD8
LocusID (NCBI) 54951
Atlas_Id 62017
Location 4p12  [Link to chromosome band 4p12]
Location_base_pair Starts at 47450789 and ends at 47463730 bp from pter ( according to hg38-Dec_2013)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)COMMD8   26036
Cards
Entrez_Gene (NCBI)COMMD8  54951  COMM domain containing 8
Aliases
GeneCards (Weizmann)COMMD8
Ensembl hg19 (Hinxton)ENSG00000169019 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000169019 [Gene_View]  chr4:47450789-47463730 [Contig_View]  COMMD8 [Vega]
ICGC DataPortalENSG00000169019
TCGA cBioPortalCOMMD8
AceView (NCBI)COMMD8
Genatlas (Paris)COMMD8
WikiGenes54951
SOURCE (Princeton)COMMD8
Genetics Home Reference (NIH)COMMD8
Genomic and cartography
GoldenPath hg38 (UCSC)COMMD8  -     chr4:47450789-47463730 -  4p12   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)COMMD8  -     4p12   [Description]    (hg19-Feb_2009)
EnsemblCOMMD8 - 4p12 [CytoView hg19]  COMMD8 - 4p12 [CytoView hg38]
Mapping of homologs : NCBICOMMD8 [Mapview hg19]  COMMD8 [Mapview hg38]
OMIM616656   
Gene and transcription
Genbank (Entrez)AF182421 AK000509 AY542163 BC008371 BC015145
RefSeq transcript (Entrez)NM_001329668 NM_017845
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)COMMD8
Cluster EST : UnigeneHs.23956 [ NCBI ]
CGAP (NCI)Hs.23956
Alternative Splicing GalleryENSG00000169019
Gene ExpressionCOMMD8 [ NCBI-GEO ]   COMMD8 [ EBI - ARRAY_EXPRESS ]   COMMD8 [ SEEK ]   COMMD8 [ MEM ]
Gene Expression Viewer (FireBrowse)COMMD8 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)54951
GTEX Portal (Tissue expression)COMMD8
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9NX08   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9NX08  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9NX08
Splice isoforms : SwissVarQ9NX08
PhosPhoSitePlusQ9NX08
Domaine pattern : Prosite (Expaxy)COMM (PS51269)   
Domains : Interpro (EBI)COMM   
Domain families : Pfam (Sanger)COMM_domain (PF07258)   
Domain families : Pfam (NCBI)pfam07258   
Conserved Domain (NCBI)COMMD8
DMDM Disease mutations54951
Blocks (Seattle)COMMD8
SuperfamilyQ9NX08
Human Protein AtlasENSG00000169019
Peptide AtlasQ9NX08
HPRD13086
IPIIPI00016447   
Protein Interaction databases
DIP (DOE-UCLA)Q9NX08
IntAct (EBI)Q9NX08
FunCoupENSG00000169019
BioGRIDCOMMD8
STRING (EMBL)COMMD8
ZODIACCOMMD8
Ontologies - Pathways
QuickGOQ9NX08
Ontology : AmiGOprotein binding  nucleoplasm  cytosol  transcription, DNA-templated  regulation of transcription, DNA-templated  
Ontology : EGO-EBIprotein binding  nucleoplasm  cytosol  transcription, DNA-templated  regulation of transcription, DNA-templated  
NDEx NetworkCOMMD8
Atlas of Cancer Signalling NetworkCOMMD8
Wikipedia pathwaysCOMMD8
Orthology - Evolution
OrthoDB54951
GeneTree (enSembl)ENSG00000169019
Phylogenetic Trees/Animal Genes : TreeFamCOMMD8
HOVERGENQ9NX08
HOGENOMQ9NX08
Homologs : HomoloGeneCOMMD8
Homology/Alignments : Family Browser (UCSC)COMMD8
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerCOMMD8 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)COMMD8
dbVarCOMMD8
ClinVarCOMMD8
1000_GenomesCOMMD8 
Exome Variant ServerCOMMD8
ExAC (Exome Aggregation Consortium)COMMD8 (select the gene name)
Genetic variants : HAPMAP54951
Genomic Variants (DGV)COMMD8 [DGVbeta]
DECIPHERCOMMD8 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisCOMMD8 
Mutations
ICGC Data PortalCOMMD8 
TCGA Data PortalCOMMD8 
Broad Tumor PortalCOMMD8
OASIS PortalCOMMD8 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICCOMMD8  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDCOMMD8
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch COMMD8
DgiDB (Drug Gene Interaction Database)COMMD8
DoCM (Curated mutations)COMMD8 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)COMMD8 (select a term)
intoGenCOMMD8
Cancer3DCOMMD8(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM616656   
Orphanet
MedgenCOMMD8
Genetic Testing Registry COMMD8
NextProtQ9NX08 [Medical]
TSGene54951
GENETestsCOMMD8
Target ValidationCOMMD8
Huge Navigator COMMD8 [HugePedia]
snp3D : Map Gene to Disease54951
BioCentury BCIQCOMMD8
ClinGenCOMMD8
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD54951
Chemical/Pharm GKB GenePA134876825
Clinical trialCOMMD8
Miscellaneous
canSAR (ICR)COMMD8 (select the gene name)
Probes
Litterature
PubMed17 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineCOMMD8
EVEXCOMMD8
GoPubMedCOMMD8
iHOPCOMMD8
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Mon Sep 18 13:05:13 CEST 2017

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