Atlas of Genetics and Cytogenetics in Oncology and Haematology

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COMMD9 (COMM domain containing 9)

Identity

Alias_symbol (synonym)HSPC166
FLJ31106
Other aliasC11orf55
LINC00610
HGNC (Hugo) COMMD9
LocusID (NCBI) 29099
Atlas_Id 57370
Location 11p13  [Link to chromosome band 11p13]
Location_base_pair Starts at 36272292 and ends at 36289449 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)		Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
CAPRIN1 (11p13) / COMMD9 (11p13)COMMD9 (11p13) / COMMD9 (11p13)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 

External links

Nomenclature
HGNC (Hugo)COMMD9   25014
Cards
Entrez_Gene (NCBI)COMMD9  29099  COMM domain containing 9
AliasesC11orf55; HSPC166; LINC00610
GeneCards (Weizmann)COMMD9
Ensembl hg19 (Hinxton)ENSG00000110442 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000110442 [Gene_View]  ENSG00000110442 [Sequence]  chr11:36272292-36289449 [Contig_View]  COMMD9 [Vega]
ICGC DataPortalENSG00000110442
TCGA cBioPortalCOMMD9
AceView (NCBI)COMMD9
Genatlas (Paris)COMMD9
WikiGenes29099
SOURCE (Princeton)COMMD9
Genetics Home Reference (NIH)COMMD9
Genomic and cartography
GoldenPath hg38 (UCSC)COMMD9  -     chr11:36272292-36289449 -  11p13   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)COMMD9  -     11p13   [Description]    (hg19-Feb_2009)
GoldenPathCOMMD9 - 11p13 [CytoView hg19]  COMMD9 - 11p13 [CytoView hg38]
ImmunoBaseENSG00000110442
Mapping of homologs : NCBICOMMD9 [Mapview hg19]  COMMD9 [Mapview hg38]
OMIM612299   
Gene and transcription
Genbank (Entrez)AF161515 AI090006 AK055668 AK127155 AK223213
RefSeq transcript (Entrez)NM_001101653 NM_001307932 NM_001307937 NM_014186 NM_207428
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)COMMD9
Cluster EST : UnigeneHs.279836 [ NCBI ]
CGAP (NCI)Hs.279836
Alternative Splicing GalleryENSG00000110442
Gene ExpressionCOMMD9 [ NCBI-GEO ]   COMMD9 [ EBI - ARRAY_EXPRESS ]   COMMD9 [ SEEK ]   COMMD9 [ MEM ]
Gene Expression Viewer (FireBrowse)COMMD9 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)29099
GTEX Portal (Tissue expression)COMMD9
Human Protein AtlasENSG00000110442-COMMD9 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9P000   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9P000  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9P000
Splice isoforms : SwissVarQ9P000
PhosPhoSitePlusQ9P000
Domaine pattern : Prosite (Expaxy)COMM (PS51269)   
Domains : Interpro (EBI)COMM    COMMD9   
Domain families : Pfam (Sanger)COMM_domain (PF07258)   
Domain families : Pfam (NCBI)pfam07258   
Conserved Domain (NCBI)COMMD9
DMDM Disease mutations29099
Blocks (Seattle)COMMD9
PDB (RSDB)4NKN    4OE9   
PDB Europe4NKN    4OE9   
PDB (PDBSum)4NKN    4OE9   
PDB (IMB)4NKN    4OE9   
Structural Biology KnowledgeBase4NKN    4OE9   
SCOP (Structural Classification of Proteins)4NKN    4OE9   
CATH (Classification of proteins structures)4NKN    4OE9   
SuperfamilyQ9P000
Human Protein Atlas [tissue]ENSG00000110442-COMMD9 [tissue]
Peptide AtlasQ9P000
IPIIPI00305212   IPI00856091   IPI01015982   IPI00978542   
Protein Interaction databases
DIP (DOE-UCLA)Q9P000
IntAct (EBI)Q9P000
FunCoupENSG00000110442
BioGRIDCOMMD9
STRING (EMBL)COMMD9
ZODIACCOMMD9
Ontologies - Pathways
QuickGOQ9P000
Ontology : AmiGOprotein binding  extracellular region  nucleus  Golgi apparatus  cytosol  sodium ion transport  secretory granule lumen  cholesterol homeostasis  neutrophil degranulation  ficolin-1-rich granule lumen  
Ontology : EGO-EBIprotein binding  extracellular region  nucleus  Golgi apparatus  cytosol  sodium ion transport  secretory granule lumen  cholesterol homeostasis  neutrophil degranulation  ficolin-1-rich granule lumen  
NDEx NetworkCOMMD9
Atlas of Cancer Signalling NetworkCOMMD9
Wikipedia pathwaysCOMMD9
Orthology - Evolution
OrthoDB29099
GeneTree (enSembl)ENSG00000110442
Phylogenetic Trees/Animal Genes : TreeFamCOMMD9
HOGENOMQ9P000
Homologs : HomoloGeneCOMMD9
Homology/Alignments : Family Browser (UCSC)COMMD9
Gene fusions - Rearrangements
Fusion : QuiverCOMMD9
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerCOMMD9 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)COMMD9
dbVarCOMMD9
ClinVarCOMMD9
1000_GenomesCOMMD9 
Exome Variant ServerCOMMD9
ExAC (Exome Aggregation Consortium)ENSG00000110442
GNOMAD BrowserENSG00000110442
Varsome BrowserCOMMD9
Genetic variants : HAPMAP29099
Genomic Variants (DGV)COMMD9 [DGVbeta]
DECIPHERCOMMD9 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisCOMMD9 
Mutations
ICGC Data PortalCOMMD9 
TCGA Data PortalCOMMD9 
Broad Tumor PortalCOMMD9
OASIS PortalCOMMD9 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICCOMMD9  [overview]  [genome browser]  [tissue]  [distribution]  
Somatic Mutations in Cancer : COSMIC3DCOMMD9
Mutations and Diseases : HGMDCOMMD9
BioMutasearch COMMD9
DgiDB (Drug Gene Interaction Database)COMMD9
DoCM (Curated mutations)COMMD9 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)COMMD9 (select a term)
intoGenCOMMD9
Cancer3DCOMMD9(select the gene name)
Impact of mutations[PolyPhen2] [Provean] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM612299   
Orphanet
DisGeNETCOMMD9
MedgenCOMMD9
Genetic Testing Registry COMMD9
NextProtQ9P000 [Medical]
TSGene29099
GENETestsCOMMD9
Target ValidationCOMMD9
Huge Navigator COMMD9 [HugePedia]
snp3D : Map Gene to Disease29099
BioCentury BCIQCOMMD9
ClinGenCOMMD9
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD29099
Chemical/Pharm GKB GenePA134930445
Clinical trialCOMMD9
Miscellaneous
canSAR (ICR)COMMD9 (select the gene name)
DataMed IndexCOMMD9
Probes
Litterature
PubMed20 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineCOMMD9
EVEXCOMMD9
GoPubMedCOMMD9
iHOPCOMMD9
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Wed Nov 13 17:38:16 CET 2019
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