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COPB2 (coatomer protein complex subunit beta 2)

Identity

Other aliasbeta'-COP
HGNC (Hugo) COPB2
LocusID (NCBI) 9276
Atlas_Id 57020
Location 3q23  [Link to chromosome band 3q23]
Location_base_pair Starts at 139357591 and ends at 139389680 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
COPB2 (3q23) / NDUFV1 (11q13.2)COPB2 (3q23) / RALGAPB (20q11.23)COPB2 (3q23) / RPLP1 (15q23)
COPB2 (3q23) / TMEM106C (12q13.11)PIK3CB (3q22.3) / COPB2 (3q23)XIST (Xq13.2) / COPB2 (3q23)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)COPB2   2232
Cards
Entrez_Gene (NCBI)COPB2  9276  coatomer protein complex subunit beta 2
Aliasesbeta'-COP
GeneCards (Weizmann)COPB2
Ensembl hg19 (Hinxton) [Gene_View]
Ensembl hg38 (Hinxton) [Gene_View]  chr3:139357591-139389680 [Contig_View]  COPB2 [Vega]
TCGA cBioPortalCOPB2
AceView (NCBI)COPB2
Genatlas (Paris)COPB2
WikiGenes9276
SOURCE (Princeton)COPB2
Genetics Home Reference (NIH)COPB2
Genomic and cartography
GoldenPath hg38 (UCSC)COPB2  -     chr3:139357591-139389680 -  3q23   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)COPB2  -     3q23   [Description]    (hg19-Feb_2009)
EnsemblCOPB2 - 3q23 [CytoView hg19]  COPB2 - 3q23 [CytoView hg38]
Mapping of homologs : NCBICOPB2 [Mapview hg19]  COPB2 [Mapview hg38]
OMIM606990   
Gene and transcription
Genbank (Entrez)AK128561 AK302943 AK304219 BC000326 DC347783
RefSeq transcript (Entrez)NM_004766
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)COPB2
Cluster EST : UnigeneHs.681616 [ NCBI ]
CGAP (NCI)Hs.681616
Gene ExpressionCOPB2 [ NCBI-GEO ]   COPB2 [ EBI - ARRAY_EXPRESS ]   COPB2 [ SEEK ]   COPB2 [ MEM ]
Gene Expression Viewer (FireBrowse)COPB2 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)9276
GTEX Portal (Tissue expression)COPB2
Protein : pattern, domain, 3D structure
UniProt/SwissProtP35606   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtP35606  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProP35606
Splice isoforms : SwissVarP35606
PhosPhoSitePlusP35606
Domaine pattern : Prosite (Expaxy)WD_REPEATS_2 (PS50082)    WD_REPEATS_REGION (PS50294)   
Domains : Interpro (EBI)Coatomer_WD-assoc_reg    COPB2    G-protein_beta_WD-40_rep    WD40/YVTN_repeat-like_dom    WD40_repeat    WD40_repeat_dom   
Domain families : Pfam (Sanger)Coatomer_WDAD (PF04053)    WD40 (PF00400)   
Domain families : Pfam (NCBI)pfam04053    pfam00400   
Domain families : Smart (EMBL)WD40 (SM00320)  
Conserved Domain (NCBI)COPB2
DMDM Disease mutations9276
Blocks (Seattle)COPB2
SuperfamilyP35606
Peptide AtlasP35606
IPIIPI00220219   IPI00908621   IPI00789674   IPI00966462   IPI00965142   IPI00967011   IPI00964914   IPI00966209   IPI00964598   
Protein Interaction databases
DIP (DOE-UCLA)P35606
IntAct (EBI)P35606
BioGRIDCOPB2
STRING (EMBL)COPB2
ZODIACCOPB2
Ontologies - Pathways
QuickGOP35606
Ontology : AmiGOGolgi membrane  structural molecule activity  protein binding  endoplasmic reticulum membrane  cytosol  intracellular protein transport  ER to Golgi vesicle-mediated transport  ER to Golgi vesicle-mediated transport  retrograde vesicle-mediated transport, Golgi to ER  intra-Golgi vesicle-mediated transport  COPI vesicle coat  transport vesicle  toxin transport  
Ontology : EGO-EBIGolgi membrane  structural molecule activity  protein binding  endoplasmic reticulum membrane  cytosol  intracellular protein transport  ER to Golgi vesicle-mediated transport  ER to Golgi vesicle-mediated transport  retrograde vesicle-mediated transport, Golgi to ER  intra-Golgi vesicle-mediated transport  COPI vesicle coat  transport vesicle  toxin transport  
NDEx NetworkCOPB2
Atlas of Cancer Signalling NetworkCOPB2
Wikipedia pathwaysCOPB2
Orthology - Evolution
OrthoDB9276
Phylogenetic Trees/Animal Genes : TreeFamCOPB2
HOVERGENP35606
HOGENOMP35606
Homologs : HomoloGeneCOPB2
Homology/Alignments : Family Browser (UCSC)COPB2
Gene fusions - Rearrangements
Fusion: Tumor Portal COPB2
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerCOPB2 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)COPB2
dbVarCOPB2
ClinVarCOPB2
1000_GenomesCOPB2 
Exome Variant ServerCOPB2
ExAC (Exome Aggregation Consortium)
Genetic variants : HAPMAP9276
Genomic Variants (DGV)COPB2 [DGVbeta]
DECIPHERCOPB2 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisCOPB2 
Mutations
ICGC Data PortalCOPB2 
TCGA Data PortalCOPB2 
Broad Tumor PortalCOPB2
OASIS PortalCOPB2 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICCOPB2  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDCOPB2
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch COPB2
DgiDB (Drug Gene Interaction Database)COPB2
DoCM (Curated mutations)COPB2 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)COPB2 (select a term)
intoGenCOPB2
Cancer3DCOPB2(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM606990   
Orphanet
MedgenCOPB2
Genetic Testing Registry COPB2
NextProtP35606 [Medical]
TSGene9276
GENETestsCOPB2
Target ValidationCOPB2
Huge Navigator COPB2 [HugePedia]
snp3D : Map Gene to Disease9276
BioCentury BCIQCOPB2
ClinGenCOPB2
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD9276
Chemical/Pharm GKB GenePA26748
Clinical trialCOPB2
Miscellaneous
canSAR (ICR)COPB2 (select the gene name)
Probes
Litterature
PubMed62 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineCOPB2
EVEXCOPB2
GoPubMedCOPB2
iHOPCOPB2
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Thu Nov 9 12:45:33 CET 2017

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