Atlas of Genetics and Cytogenetics in Oncology and Haematology


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COPE (coatomer protein complex subunit epsilon)

Identity

Alias_namescoatomer protein complex
Alias_symbol (synonym)epsilon-COP
Other alias
HGNC (Hugo) COPE
LocusID (NCBI) 11316
Atlas_Id 50234
Location 19p13.11  [Link to chromosome band 19p13]
Location_base_pair Starts at 18899511 and ends at 18919403 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
COPE (19p13.11) / GNPTG (16p13.3)COPE (19p13.11) / HBP1 (7q22.3)COPE (19p13.11) / PLXNB1 (3p21.31)
COPE (19p13.11) / TMEM59L (19p13.11)LOC100507584 () / COPE (19p13.11)TMEM64 (8q21.3) / COPE (19p13.11)
COPE 19p13.11 / TMEM59L 19p13.11

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)COPE   2234
Cards
Entrez_Gene (NCBI)COPE  11316  coatomer protein complex subunit epsilon
Aliasesepsilon-COP
GeneCards (Weizmann)COPE
Ensembl hg19 (Hinxton)ENSG00000105669 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000105669 [Gene_View]  chr19:18899511-18919403 [Contig_View]  COPE [Vega]
ICGC DataPortalENSG00000105669
TCGA cBioPortalCOPE
AceView (NCBI)COPE
Genatlas (Paris)COPE
WikiGenes11316
SOURCE (Princeton)COPE
Genetics Home Reference (NIH)COPE
Genomic and cartography
GoldenPath hg38 (UCSC)COPE  -     chr19:18899511-18919403 -  19p13.11   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)COPE  -     19p13.11   [Description]    (hg19-Feb_2009)
EnsemblCOPE - 19p13.11 [CytoView hg19]  COPE - 19p13.11 [CytoView hg38]
Mapping of homologs : NCBICOPE [Mapview hg19]  COPE [Mapview hg38]
OMIM606942   
Gene and transcription
Genbank (Entrez)AF092438 AI680336 AJ131182 AJ249366 AK023303
RefSeq transcript (Entrez)NM_001330469 NM_007263 NM_199442 NM_199444
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)COPE
Cluster EST : UnigeneHs.10326 [ NCBI ]
CGAP (NCI)Hs.10326
Alternative Splicing GalleryENSG00000105669
Gene ExpressionCOPE [ NCBI-GEO ]   COPE [ EBI - ARRAY_EXPRESS ]   COPE [ SEEK ]   COPE [ MEM ]
Gene Expression Viewer (FireBrowse)COPE [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)11316
GTEX Portal (Tissue expression)COPE
Human Protein AtlasENSG00000105669-COPE [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtO14579   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtO14579  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProO14579
Splice isoforms : SwissVarO14579
PhosPhoSitePlusO14579
Domains : Interpro (EBI)Coatomer_esu    TPR-like_helical_dom   
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)COPE
DMDM Disease mutations11316
Blocks (Seattle)COPE
SuperfamilyO14579
Human Protein Atlas [tissue]ENSG00000105669-COPE [tissue]
Peptide AtlasO14579
HPRD06089
IPIIPI00465132   IPI01013183   IPI00399318   IPI00399319   
Protein Interaction databases
DIP (DOE-UCLA)O14579
IntAct (EBI)O14579
FunCoupENSG00000105669
BioGRIDCOPE
STRING (EMBL)COPE
ZODIACCOPE
Ontologies - Pathways
QuickGOO14579
Ontology : AmiGOGolgi membrane  structural molecule activity  protein binding  nucleoplasm  endoplasmic reticulum membrane  Golgi apparatus  cytosol  ER to Golgi vesicle-mediated transport  ER to Golgi vesicle-mediated transport  retrograde vesicle-mediated transport, Golgi to ER  retrograde vesicle-mediated transport, Golgi to ER  intra-Golgi vesicle-mediated transport  intra-Golgi vesicle-mediated transport  protein transport  COPI vesicle coat  COPI vesicle coat  transport vesicle  
Ontology : EGO-EBIGolgi membrane  structural molecule activity  protein binding  nucleoplasm  endoplasmic reticulum membrane  Golgi apparatus  cytosol  ER to Golgi vesicle-mediated transport  ER to Golgi vesicle-mediated transport  retrograde vesicle-mediated transport, Golgi to ER  retrograde vesicle-mediated transport, Golgi to ER  intra-Golgi vesicle-mediated transport  intra-Golgi vesicle-mediated transport  protein transport  COPI vesicle coat  COPI vesicle coat  transport vesicle  
NDEx NetworkCOPE
Atlas of Cancer Signalling NetworkCOPE
Wikipedia pathwaysCOPE
Orthology - Evolution
OrthoDB11316
GeneTree (enSembl)ENSG00000105669
Phylogenetic Trees/Animal Genes : TreeFamCOPE
HOVERGENO14579
HOGENOMO14579
Homologs : HomoloGeneCOPE
Homology/Alignments : Family Browser (UCSC)COPE
Gene fusions - Rearrangements
Fusion : MitelmanCOPE/TMEM59L [19p13.11/19p13.11]  
Fusion: TCGA_MDACCCOPE 19p13.11 TMEM59L 19p13.11 LUAD
Tumor Fusion PortalCOPE
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerCOPE [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)COPE
dbVarCOPE
ClinVarCOPE
1000_GenomesCOPE 
Exome Variant ServerCOPE
ExAC (Exome Aggregation Consortium)ENSG00000105669
GNOMAD BrowserENSG00000105669
Genetic variants : HAPMAP11316
Genomic Variants (DGV)COPE [DGVbeta]
DECIPHERCOPE [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisCOPE 
Mutations
ICGC Data PortalCOPE 
TCGA Data PortalCOPE 
Broad Tumor PortalCOPE
OASIS PortalCOPE [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICCOPE  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDCOPE
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch COPE
DgiDB (Drug Gene Interaction Database)COPE
DoCM (Curated mutations)COPE (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)COPE (select a term)
intoGenCOPE
Cancer3DCOPE(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM606942   
Orphanet
DisGeNETCOPE
MedgenCOPE
Genetic Testing Registry COPE
NextProtO14579 [Medical]
TSGene11316
GENETestsCOPE
Target ValidationCOPE
Huge Navigator COPE [HugePedia]
snp3D : Map Gene to Disease11316
BioCentury BCIQCOPE
ClinGenCOPE
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD11316
Chemical/Pharm GKB GenePA26750
Clinical trialCOPE
Miscellaneous
canSAR (ICR)COPE (select the gene name)
Probes
Litterature
PubMed52 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineCOPE
EVEXCOPE
GoPubMedCOPE
iHOPCOPE
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Tue Nov 21 14:08:36 CET 2017

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