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COPG1 (coatomer protein complex subunit gamma 1)

Identity

Alias_namesCOPG
coatomer protein complex, subunit gamma
coatomer protein complex, subunit gamma 1
Other alias
HGNC (Hugo) COPG1
LocusID (NCBI) 22820
Atlas_Id 62022
Location 3q21.3  [Link to chromosome band 3q21]
Location_base_pair Starts at 129249610 and ends at 129277773 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
ABL2 (1q25.2) / COPG1 (3q21.3)BID (22q11.21) / COPG1 (3q21.3)COPG1 (3q21.3) / ANKRD11 (16q24.3)
COPG1 (3q21.3) / COPG1 (3q21.3)COPG1 (3q21.3) / CPM (12q15)COPG1 (3q21.3) / HOXC9 (12q13.13)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)COPG1   2236
Cards
Entrez_Gene (NCBI)COPG1  22820  coatomer protein complex subunit gamma 1
AliasesCOPG
GeneCards (Weizmann)COPG1
Ensembl hg19 (Hinxton)ENSG00000181789 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000181789 [Gene_View]  chr3:129249610-129277773 [Contig_View]  COPG1 [Vega]
ICGC DataPortalENSG00000181789
TCGA cBioPortalCOPG1
AceView (NCBI)COPG1
Genatlas (Paris)COPG1
WikiGenes22820
SOURCE (Princeton)COPG1
Genetics Home Reference (NIH)COPG1
Genomic and cartography
GoldenPath hg38 (UCSC)COPG1  -     chr3:129249610-129277773 +  3q21.3   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)COPG1  -     3q21.3   [Description]    (hg19-Feb_2009)
EnsemblCOPG1 - 3q21.3 [CytoView hg19]  COPG1 - 3q21.3 [CytoView hg38]
Mapping of homologs : NCBICOPG1 [Mapview hg19]  COPG1 [Mapview hg38]
OMIM615525   
Gene and transcription
Genbank (Entrez)AB047846 AF100756 AK001724 AK024721 AK025147
RefSeq transcript (Entrez)NM_016128
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)COPG1
Cluster EST : UnigeneHs.518250 [ NCBI ]
CGAP (NCI)Hs.518250
Alternative Splicing GalleryENSG00000181789
Gene ExpressionCOPG1 [ NCBI-GEO ]   COPG1 [ EBI - ARRAY_EXPRESS ]   COPG1 [ SEEK ]   COPG1 [ MEM ]
Gene Expression Viewer (FireBrowse)COPG1 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)22820
GTEX Portal (Tissue expression)COPG1
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9Y678   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9Y678  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9Y678
Splice isoforms : SwissVarQ9Y678
PhosPhoSitePlusQ9Y678
Domains : Interpro (EBI)ARM-like    ARM-type_fold    Clathrin/coatomer_adapt-like_N    Clathrin_a/coatomer_app_sub_C    Coatomer/calthrin_app_sub_C    Coatomer/clathrin_app_Ig-like    Coatomer_g_Cpla    Coatomer_gsu    Coatomer_gsu_app_Ig-like-sub   
Domain families : Pfam (Sanger)Adaptin_N (PF01602)    Coatomer_g_Cpla (PF16381)    COP-gamma_platf (PF08752)   
Domain families : Pfam (NCBI)pfam01602    pfam16381    pfam08752   
Conserved Domain (NCBI)COPG1
DMDM Disease mutations22820
Blocks (Seattle)COPG1
PDB (SRS)1R4X   
PDB (PDBSum)1R4X   
PDB (IMB)1R4X   
PDB (RSDB)1R4X   
Structural Biology KnowledgeBase1R4X   
SCOP (Structural Classification of Proteins)1R4X   
CATH (Classification of proteins structures)1R4X   
SuperfamilyQ9Y678
Human Protein AtlasENSG00000181789
Peptide AtlasQ9Y678
HPRD09887
IPIIPI00783982   IPI00964542   IPI00966036   IPI00794911   
Protein Interaction databases
DIP (DOE-UCLA)Q9Y678
IntAct (EBI)Q9Y678
FunCoupENSG00000181789
BioGRIDCOPG1
STRING (EMBL)COPG1
ZODIACCOPG1
Ontologies - Pathways
QuickGOQ9Y678
Ontology : AmiGOGolgi membrane  Golgi membrane  structural molecule activity  protein binding  endoplasmic reticulum membrane  Golgi apparatus  cytosol  intracellular protein transport  ER to Golgi vesicle-mediated transport  retrograde vesicle-mediated transport, Golgi to ER  COPI vesicle coat  transport vesicle  establishment of Golgi localization  organelle transport along microtubule  
Ontology : EGO-EBIGolgi membrane  Golgi membrane  structural molecule activity  protein binding  endoplasmic reticulum membrane  Golgi apparatus  cytosol  intracellular protein transport  ER to Golgi vesicle-mediated transport  retrograde vesicle-mediated transport, Golgi to ER  COPI vesicle coat  transport vesicle  establishment of Golgi localization  organelle transport along microtubule  
NDEx NetworkCOPG1
Atlas of Cancer Signalling NetworkCOPG1
Wikipedia pathwaysCOPG1
Orthology - Evolution
OrthoDB22820
GeneTree (enSembl)ENSG00000181789
Phylogenetic Trees/Animal Genes : TreeFamCOPG1
HOVERGENQ9Y678
HOGENOMQ9Y678
Homologs : HomoloGeneCOPG1
Homology/Alignments : Family Browser (UCSC)COPG1
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerCOPG1 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)COPG1
dbVarCOPG1
ClinVarCOPG1
1000_GenomesCOPG1 
Exome Variant ServerCOPG1
ExAC (Exome Aggregation Consortium)COPG1 (select the gene name)
Genetic variants : HAPMAP22820
Genomic Variants (DGV)COPG1 [DGVbeta]
DECIPHERCOPG1 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisCOPG1 
Mutations
ICGC Data PortalCOPG1 
TCGA Data PortalCOPG1 
Broad Tumor PortalCOPG1
OASIS PortalCOPG1 [ Somatic mutations - Copy number]
Mutations and Diseases : HGMDCOPG1
BioMutasearch COPG1
DgiDB (Drug Gene Interaction Database)COPG1
DoCM (Curated mutations)COPG1 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)COPG1 (select a term)
intoGenCOPG1
Cancer3DCOPG1(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM615525   
Orphanet
MedgenCOPG1
Genetic Testing Registry COPG1
NextProtQ9Y678 [Medical]
TSGene22820
GENETestsCOPG1
Target ValidationCOPG1
Huge Navigator COPG1 [HugePedia]
snp3D : Map Gene to Disease22820
BioCentury BCIQCOPG1
ClinGenCOPG1
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD22820
Chemical/Pharm GKB GenePA26752
Clinical trialCOPG1
Miscellaneous
canSAR (ICR)COPG1 (select the gene name)
Probes
Litterature
PubMed58 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineCOPG1
EVEXCOPG1
GoPubMedCOPG1
iHOPCOPG1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Sep 18 13:05:13 CEST 2017

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