Atlas of Genetics and Cytogenetics in Oncology and Haematology


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COPG2 (coatomer protein complex, subunit gamma 2)

Identity

Other names2-COP
gamma-2-COP
HGNC (Hugo) COPG2
LocusID (NCBI) 26958
Location 7q32.2
Location_base_pair Starts at 130295824 and ends at 130353598 bp from pter ( according to hg19-Feb_2009)
Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 

External links

Nomenclature
HGNC (Hugo)COPG2   2237
Cards
Entrez_Gene (NCBI)COPG2  26958  coatomer protein complex, subunit gamma 2
GeneCards (Weizmann)COPG2
Ensembl (Hinxton) [Gene_View]  chr7:130295824-130353598 [Contig_View]  COPG2 [Vega]
cBioPortalCOPG2
AceView (NCBI)COPG2
Genatlas (Paris)COPG2
WikiGenes26958
SOURCE (Princeton)NM_001290033 NM_012133
Genomic and cartography
GoldenPath (UCSC)COPG2  -  7q32.2   chr7:130295824-130353598 -  7q32.2   [Description]    (hg19-Feb_2009)
EnsemblCOPG2 - 7q32.2 [CytoView]
Mapping of homologs : NCBICOPG2 [Mapview]
OMIM604355   
Gene and transcription
Genbank (Entrez)AB047847 AF157833 AF207598 AF308295 AI566718
RefSeq transcript (Entrez)NM_001290033 NM_012133
RefSeq genomic (Entrez)AC_000139 NC_000007 NC_018918 NT_007933 NW_001839071 NW_004929332
Consensus coding sequences : CCDS (NCBI)COPG2
Cluster EST : UnigeneHs.6421 [ NCBI ]
CGAP (NCI)Hs.6421
Alternative Splicing : Fast-db (Paris)GSHG0044014
Gene ExpressionCOPG2 [ NCBI-GEO ]     COPG2 [ SEEK ]   COPG2 [ MEM ]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9UBF2 (Uniprot)
NextProtQ9UBF2  [Medical]
With graphics : InterProQ9UBF2
Splice isoforms : SwissVarQ9UBF2 (Swissvar)
Domains : Interpro (EBI)ARM-like [organisation]   ARM-type_fold [organisation]   Clathrin/coatomer_adapt-like_N [organisation]   Clathrin_a/coatomer_app_sub_C [organisation]   Coatomer/calthrin_app_sub_C [organisation]   Coatomer/clathrin_app_Ig-like [organisation]   Coatomer_gsu [organisation]   Coatomer_gsu_app_Ig-like-sub [organisation]  
Related proteins : CluSTrQ9UBF2
Domain families : Pfam (Sanger)Adaptin_N (PF01602)    COP-gamma_platf (PF08752)   
Domain families : Pfam (NCBI)pfam01602    pfam08752   
DMDM Disease mutations26958
Blocks (Seattle)Q9UBF2
Peptide AtlasQ9UBF2
HPRD05074
IPIIPI00002557   
Protein Interaction databases
DIP (DOE-UCLA)Q9UBF2
IntAct (EBI)Q9UBF2
BioGRIDCOPG2
InParanoidQ9UBF2
Interologous Interaction database Q9UBF2
IntegromeDBCOPG2
STRING (EMBL)COPG2
Ontologies - Pathways
Ontology : AmiGOstructural molecule activity  cytosol  intracellular protein transport  retrograde vesicle-mediated transport, Golgi to ER  intra-Golgi vesicle-mediated transport  COPI vesicle coat  
Ontology : EGO-EBIstructural molecule activity  cytosol  intracellular protein transport  retrograde vesicle-mediated transport, Golgi to ER  intra-Golgi vesicle-mediated transport  COPI vesicle coat  
Protein Interaction DatabaseCOPG2
Wikipedia pathwaysCOPG2
Gene fusion - rearrangments
Polymorphisms : SNP, mutations, diseases
SNP Single Nucleotide Polymorphism (NCBI)COPG2
snp3D : Map Gene to Disease26958
SNP (GeneSNP Utah)COPG2
SNP : HGBaseCOPG2
Genetic variants : HAPMAPCOPG2
Exome VariantCOPG2
1000_GenomesCOPG2 
Somatic Mutations in Cancer : COSMICCOPG2 
CONAN: Copy Number AnalysisCOPG2 
Mutations and Diseases : HGMDCOPG2
Mutations and Diseases : intOGenCOPG2
Genomic VariantsCOPG2  COPG2 [DGVbeta]
dbVarCOPG2
ClinVarCOPG2
Pred. of missensesPolyPhen-2  SIFT(SG)  SIFT(JCVI)  Align-GVGD  MutAssessor  Mutanalyser  
Pred. splicesGeneSplicer  Human Splicing Finder  MaxEntScan  
Diseases
OMIM604355   
MedgenCOPG2
GENETestsCOPG2
Disease Genetic AssociationCOPG2
Huge Navigator COPG2 [HugePedia]  COPG2 [HugeCancerGEM]
General knowledge
Homologs : HomoloGeneCOPG2
Homology/Alignments : Family Browser (UCSC)COPG2
Phylogenetic Trees/Animal Genes : TreeFamCOPG2
Chemical/Protein Interactions : CTD26958
Chemical/Pharm GKB GenePA26753
Clinical trialCOPG2
Other databases
Probes
Litterature
PubMed33 Pubmed reference(s) in Entrez
CoreMineCOPG2
iHOPCOPG2
OncoSearchCOPG2
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

Contributor(s)

Written09-2002Dessen P, Le Minor S
Updated12-2013Dessen P

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Mon Sep 22 18:45:36 CEST 2014

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