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COPG2 (coatomer protein complex subunit gamma 2)

Identity

Other names2-COP
gamma-2-COP
HGNC (Hugo) COPG2
LocusID (NCBI) 26958
Atlas_Id 40132
Location 7q32.2  [Link to chromosome band 7q32]
Location_base_pair Starts at 130295824 and ends at 130353598 bp from pter ( according to hg19-Feb_2009)
Fusion genes
(updated 2016)
COPG2 (7q32.2) / CSGALNACT1 (8p21.3)PBX1 (1q23.3) / COPG2 (7q32.2)PBX1 1q23.3 / COPG2 7q32.2

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)COPG2   2237
Cards
Entrez_Gene (NCBI)COPG2  26958  coatomer protein complex subunit gamma 2
Aliases2-COP; gamma-2-COP
GeneCards (Weizmann)COPG2
Ensembl hg19 (Hinxton)ENSG00000158623 [Gene_View]  chr7:130295824-130353598 [Contig_View]  COPG2 [Vega]
Ensembl hg38 (Hinxton)ENSG00000158623 [Gene_View]  chr7:130295824-130353598 [Contig_View]  COPG2 [Vega]
ICGC DataPortalENSG00000158623
TCGA cBioPortalCOPG2
AceView (NCBI)COPG2
Genatlas (Paris)COPG2
WikiGenes26958
SOURCE (Princeton)COPG2
Genomic and cartography
GoldenPath hg19 (UCSC)COPG2  -     chr7:130295824-130353598 -  7q32.2   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)COPG2  -     7q32.2   [Description]    (hg38-Dec_2013)
EnsemblCOPG2 - 7q32.2 [CytoView hg19]  COPG2 - 7q32.2 [CytoView hg38]
Mapping of homologs : NCBICOPG2 [Mapview hg19]  COPG2 [Mapview hg38]
OMIM604355   
Gene and transcription
Genbank (Entrez)AB047847 AF157833 AF207598 AF308295 AI566718
RefSeq transcript (Entrez)NM_001290033 NM_012133
RefSeq genomic (Entrez)NC_000007 NC_018918 NT_007933 NW_004929332
Consensus coding sequences : CCDS (NCBI)COPG2
Cluster EST : UnigeneHs.6421 [ NCBI ]
CGAP (NCI)Hs.6421
Alternative Splicing GalleryENSG00000158623
Gene ExpressionCOPG2 [ NCBI-GEO ]   COPG2 [ EBI - ARRAY_EXPRESS ]   COPG2 [ SEEK ]   COPG2 [ MEM ]
Gene Expression Viewer (FireBrowse)COPG2 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)26958
GTEX Portal (Tissue expression)COPG2
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9UBF2 (Uniprot)
NextProtQ9UBF2  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9UBF2
Splice isoforms : SwissVarQ9UBF2 (Swissvar)
PhosPhoSitePlusQ9UBF2
Domains : Interpro (EBI)ARM-like    ARM-type_fold    Clathrin/coatomer_adapt-like_N    Clathrin_a/coatomer_app_sub_C    Coatomer/calthrin_app_sub_C    Coatomer/clathrin_app_Ig-like    Coatomer_g_Cpla    Coatomer_gsu    Coatomer_gsu_app_Ig-like-sub   
Domain families : Pfam (Sanger)Adaptin_N (PF01602)    Coatomer_g_Cpla (PF16381)    COP-gamma_platf (PF08752)   
Domain families : Pfam (NCBI)pfam01602    pfam16381    pfam08752   
DMDM Disease mutations26958
Blocks (Seattle)COPG2
SuperfamilyQ9UBF2
Human Protein AtlasENSG00000158623
Peptide AtlasQ9UBF2
HPRD05074
IPIIPI00002557   
Protein Interaction databases
DIP (DOE-UCLA)Q9UBF2
IntAct (EBI)Q9UBF2
FunCoupENSG00000158623
BioGRIDCOPG2
STRING (EMBL)COPG2
ZODIACCOPG2
Ontologies - Pathways
QuickGOQ9UBF2
Ontology : AmiGOGolgi membrane  structural molecule activity  endoplasmic reticulum membrane  cytosol  intracellular protein transport  ER to Golgi vesicle-mediated transport  retrograde vesicle-mediated transport, Golgi to ER  intra-Golgi vesicle-mediated transport  COPI vesicle coat  transport vesicle  
Ontology : EGO-EBIGolgi membrane  structural molecule activity  endoplasmic reticulum membrane  cytosol  intracellular protein transport  ER to Golgi vesicle-mediated transport  retrograde vesicle-mediated transport, Golgi to ER  intra-Golgi vesicle-mediated transport  COPI vesicle coat  transport vesicle  
NDEx Network
Atlas of Cancer Signalling NetworkCOPG2
Wikipedia pathwaysCOPG2
Orthology - Evolution
OrthoDB26958
GeneTree (enSembl)ENSG00000158623
Phylogenetic Trees/Animal Genes : TreeFamCOPG2
Homologs : HomoloGeneCOPG2
Homology/Alignments : Family Browser (UCSC)COPG2
Gene fusions - Rearrangements
Fusion: TCGAPBX1 1q23.3 COPG2 7q32.2 BRCA
Polymorphisms : SNP, variants
NCBI Variation ViewerCOPG2 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)COPG2
dbVarCOPG2
ClinVarCOPG2
1000_GenomesCOPG2 
Exome Variant ServerCOPG2
ExAC (Exome Aggregation Consortium)COPG2 (select the gene name)
Genetic variants : HAPMAP26958
Genomic Variants (DGV)COPG2 [DGVbeta]
Mutations
ICGC Data PortalCOPG2 
TCGA Data PortalCOPG2 
Broad Tumor PortalCOPG2
OASIS PortalCOPG2 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICCOPG2 
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch COPG2
DgiDB (Drug Gene Interaction Database)COPG2
DoCM (Curated mutations)COPG2 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)COPG2 (select a term)
intoGenCOPG2
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] 
Diseases
DECIPHER (Syndromes)7:130295824-130353598  ENSG00000158623
CONAN: Copy Number AnalysisCOPG2 
Mutations and Diseases : HGMDCOPG2
OMIM604355   
MedgenCOPG2
Genetic Testing Registry COPG2
NextProtQ9UBF2 [Medical]
TSGene26958
GENETestsCOPG2
Huge Navigator COPG2 [HugePedia]
snp3D : Map Gene to Disease26958
BioCentury BCIQCOPG2
ClinGenCOPG2
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD26958
Chemical/Pharm GKB GenePA26753
Clinical trialCOPG2
Miscellaneous
canSAR (ICR)COPG2 (select the gene name)
Probes
Litterature
PubMed41 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineCOPG2
EVEXCOPG2
GoPubMedCOPG2
iHOPCOPG2
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Aug 9 19:20:17 CEST 2016

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