Atlas of Genetics and Cytogenetics in Oncology and Haematology

Home   Genes   Leukemias   Solid Tumours   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   
X Y 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 NA

COPG2 (coatomer protein complex, subunit gamma 2)

Identity

Other names2-COP
HGNC (Hugo) COPG2
LocusID (NCBI) 26958
Location 7q32.2
Location_base_pair Starts at 130146080 and ends at 130353598 bp from pter ( according to hg19-Feb_2009)
Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 

External links

Nomenclature
HGNC (Hugo)COPG2   2237
Entrez_Gene (NCBI)COPG2  26958  coatomer protein complex, subunit gamma 2
Cards
GeneCards (Weizmann)COPG2
Ensembl (Hinxton) [Gene_View]  chr7:130146080-130353598 [Contig_View]  COPG2 [Vega]
AceView (NCBI)COPG2
Genatlas (Paris)COPG2
SOURCE (Stanford)NM_012133
Genomic and cartography
GoldenPath (UCSC)COPG2  -  7q32.2   chr7:130146080-130353598 -  7q32.2   [Description]    (hg19-Feb_2009)
EnsemblCOPG2 - 7q32.2 [CytoView]
Mapping of homologs : NCBICOPG2 [Mapview]
OMIM604355   
Gene and transcription
Genbank (Entrez)AB047847 AF157833 AF207598 AF308295 AI566718
RefSeq transcript (SRS)NM_012133
RefSeq transcript (Entrez)NM_012133
RefSeq genomic (SRS)AC_000068 AC_000139 NC_000007 NC_018918 NT_007933 NT_079596 NW_001839071 NW_003871065 NW_004078032 NW_004080009
RefSeq genomic (Entrez)AC_000068 AC_000139 NC_000007 NC_018918 NT_007933 NT_079596 NW_001839071 NW_003871065 NW_004078032 NW_004080009
Consensus coding sequences : CCDS (NCBI)COPG2
Cluster EST : UnigeneHs.6421 [ SRS ] Hs.6421 [ NCBI ]
CGAP (NCI)Hs.6421
Alternative Splicing : Fast-db (Paris)GSHG0044014
Gene ExpressionCOPG2 [ NCBI-GEO ]   COPG2 [ EBI - ARRAY_EXPRESS ]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9UBF2 (SRS) Q9UBF2 (Uniprot)
NextProtQ9UBF2
With graphics : InterProQ9UBF2
Splice isoforms : SwissVarQ9UBF2(Swissvar)
Domaine pattern : Prosite (SRS)HEAT_REPEAT (PS50077)   
Domaine pattern : Prosite (Expaxy)HEAT_REPEAT (PS50077)   
Domains : Interpro (SRS)ARM-like    ARM-type_fold    Clathrin/coatomer_adapt-like_N    Clathrin_a/coatomer_app_sub_C    Coatomer/calthrin_app_sub_C    Coatomer/clathrin_app_Ig-like    Coatomer_gsu    Coatomer_gsu_app    Coatomer_gsu_app_Ig-like-sub   
Domains : Interpro (EBI)ARM-like    ARM-type_fold    Clathrin/coatomer_adapt-like_N    Clathrin_a/coatomer_app_sub_C    Coatomer/calthrin_app_sub_C    Coatomer/clathrin_app_Ig-like    Coatomer_gsu    Coatomer_gsu_app    Coatomer_gsu_app_Ig-like-sub   
Related proteins : CluSTrQ9UBF2
Domain families : Pfam (SRS)Adaptin_N (PF01602)    Gamma-COP (PF08752)   
Domain families : Pfam (Sanger)Adaptin_N (PF01602)    Gamma-COP (PF08752)   
Domain families : Pfam (NCBI)pfam01602    pfam08752   
DMDM26958
Blocks (Seattle)Q9UBF2
HPRD05074
IPIIPI00002557   
Protein Interaction databases
DIP (DOE-UCLA)Q9UBF2
IntAct (EBI)Q9UBF2
REACTOMECOPG2
Protein Interaction Database26958
BioGRIDCOPG2
InParanoidQ9UBF2
Interologous Interaction database Q9UBF2
IntegromeDBCOPG2
Polymorphism : SNP, mutations, diseases
SNP Single Nucleotide Polymorphism (NCBI)COPG2
SNP (GeneSNP Utah)COPG2
SNP : HGBaseCOPG2
Genetic variants : HAPMAPCOPG2
Somatic Mutations in Cancer : COSMICCOPG2 
CONAN: Copy Number AnalysisCOPG2 
Mutations and Diseases : HGMDCOPG2
OMIM604355   
GENETests604355   
Disease Genetic AssociationCOPG2
Huge Navigator COPG2 [HugePedia]  COPG2 [HugeCancerGEM]
Genomic VariantsCOPG2  COPG2 [DGVbeta]
snp3D : Map Gene to Disease26958
General knowledge
Homologs : HomoloGeneCOPG2
Homology/Alignments : Family Browser (UCSC)COPG2
Phylogenetic Trees/Animal Genes : TreeFamCOPG2
Chemical/Protein Interactions : CTD26958
Chemical/Pharm GKB GenePA26753
Clinical trialCOPG2
Ontology : AmiGOstructural molecule activity  intracellular protein transport  retrograde vesicle-mediated transport, Golgi to ER  intra-Golgi vesicle-mediated transport  COPI vesicle coat  
Ontology : EGO-EBIstructural molecule activity  intracellular protein transport  retrograde vesicle-mediated transport, Golgi to ER  intra-Golgi vesicle-mediated transport  COPI vesicle coat  
Other databases
Probes
Litterature
PubMed29 Pubmed reference(s) in Entrez
PubGeneCOPG2
iHOPCOPG2
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

Contributor(s)

Written09-2002Dessen P, Le Minor S
Updated01-2013Dessen P

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Wed May 1 12:32:57 CEST 2013
Home   Genes   Leukemias   Solid Tumours   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

For comments and suggestions or contributions, please contact us

jlhuret@AtlasGeneticsOncology.org.