Atlas of Genetics and Cytogenetics in Oncology and Haematology

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COPG2IT1 (COPG2 imprinted transcript 1)

Identity

Alias (NCBI)CIT1
COPG2AS
DKFZP761N09121
NCRNA00170
HGNC (Hugo) COPG2IT1
HGNC Alias symbCIT1
NCRNA00170
COPG2AS
HGNC Alias namenon-protein coding RNA 170
 COPG2 antisense RNA (non-protein coding)
 Copg2 intronic transcript 1
HGNC Previous namecoatomer protein complex, subunit gamma 2, intronic transcript 1
LocusID (NCBI) 53844
Atlas_Id 79863
Location 7q32.2  [Link to chromosome band 7q32]
Location_base_pair Starts at 130543453 and ends at 130546899 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)		Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 

External links

Nomenclature
HGNC (Hugo)COPG2IT1   2238
Cards
Entrez_Gene (NCBI)COPG2IT1    COPG2 imprinted transcript 1
AliasesCIT1; COPG2AS; DKFZP761N09121; NCRNA00170
GeneCards (Weizmann)COPG2IT1
Ensembl hg19 (Hinxton) [Gene_View]
Ensembl hg38 (Hinxton) [Gene_View]   [Sequence]  chr7:130543453-130546899 [Contig_View]  COPG2IT1 [Vega]
TCGA cBioPortalCOPG2IT1
AceView (NCBI)COPG2IT1
Genatlas (Paris)COPG2IT1
SOURCE (Princeton)COPG2IT1
Genetics Home Reference (NIH)COPG2IT1
Genomic and cartography
GoldenPath hg38 (UCSC)COPG2IT1  -     chr7:130543453-130546899 +  7q32.2   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)COPG2IT1  -     7q32.2   [Description]    (hg19-Feb_2009)
GoldenPathCOPG2IT1 - 7q32.2 [CytoView hg19]  COPG2IT1 - 7q32.2 [CytoView hg38]
genome Data Viewer NCBICOPG2IT1 [Mapview hg19]  
OMIM610581   
Gene and transcription
Genbank (Entrez)AF038190 AK123640 BQ017571
RefSeq transcript (Entrez)
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)COPG2IT1
Gene ExpressionCOPG2IT1 [ NCBI-GEO ]   COPG2IT1 [ EBI - ARRAY_EXPRESS ]   COPG2IT1 [ SEEK ]   COPG2IT1 [ MEM ]
Gene Expression Viewer (FireBrowse)COPG2IT1 [ Firebrowse - Broad ]
GenevisibleExpression of COPG2IT1 in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)53844
GTEX Portal (Tissue expression)COPG2IT1
Protein : pattern, domain, 3D structure
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)COPG2IT1
Blocks (Seattle)COPG2IT1
Protein Interaction databases
BioGRIDCOPG2IT1
STRING (EMBL)COPG2IT1
ZODIACCOPG2IT1
Ontologies - Pathways
Litterature
PubMed5 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineCOPG2IT1
EVEXCOPG2IT1
GoPubMedCOPG2IT1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Sat Dec 5 16:50:30 CET 2020
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