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COPRS (coordinator of PRMT5 and differentiation stimulator)

Identity

Alias_namesC17orf79
chromosome 17 open reading frame 79
coordinator of PRMT5, differentiation stimulator
Alias_symbol (synonym)TTP1
HSA272196
COPR5
Other alias
HGNC (Hugo) COPRS
LocusID (NCBI) 55352
Atlas_Id 62023
Location 17q11.2  [Link to chromosome band 17q11]
Location_base_pair Starts at 31851865 and ends at 31859074 bp from pter ( according to hg38-Dec_2013)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)COPRS   28848
Cards
Entrez_Gene (NCBI)COPRS  55352  coordinator of PRMT5 and differentiation stimulator
AliasesC17orf79; COPR5; HSA272196; TTP1
GeneCards (Weizmann)COPRS
Ensembl hg19 (Hinxton)ENSG00000172301 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000172301 [Gene_View]  chr17:31851865-31859074 [Contig_View]  COPRS [Vega]
ICGC DataPortalENSG00000172301
TCGA cBioPortalCOPRS
AceView (NCBI)COPRS
Genatlas (Paris)COPRS
WikiGenes55352
SOURCE (Princeton)COPRS
Genetics Home Reference (NIH)COPRS
Genomic and cartography
GoldenPath hg38 (UCSC)COPRS  -     chr17:31851865-31859074 -  17q11.2   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)COPRS  -     17q11.2   [Description]    (hg19-Feb_2009)
EnsemblCOPRS - 17q11.2 [CytoView hg19]  COPRS - 17q11.2 [CytoView hg38]
Mapping of homologs : NCBICOPRS [Mapview hg19]  COPRS [Mapview hg38]
Gene and transcription
Genbank (Entrez)AF407672 AJ272196 AK024772 BC012386 BC035483
RefSeq transcript (Entrez)NM_001330176 NM_018405
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)COPRS
Cluster EST : UnigeneHs.462729 [ NCBI ]
CGAP (NCI)Hs.462729
Alternative Splicing GalleryENSG00000172301
Gene ExpressionCOPRS [ NCBI-GEO ]   COPRS [ EBI - ARRAY_EXPRESS ]   COPRS [ SEEK ]   COPRS [ MEM ]
Gene Expression Viewer (FireBrowse)COPRS [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)55352
GTEX Portal (Tissue expression)COPRS
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9NQ92   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9NQ92  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9NQ92
Splice isoforms : SwissVarQ9NQ92
PhosPhoSitePlusQ9NQ92
Domains : Interpro (EBI)COPR5   
Domain families : Pfam (Sanger)COPR5 (PF15340)   
Domain families : Pfam (NCBI)pfam15340   
Conserved Domain (NCBI)COPRS
DMDM Disease mutations55352
Blocks (Seattle)COPRS
SuperfamilyQ9NQ92
Human Protein AtlasENSG00000172301
Peptide AtlasQ9NQ92
HPRD13675
IPIIPI00161600   IPI00746088   
Protein Interaction databases
DIP (DOE-UCLA)Q9NQ92
IntAct (EBI)Q9NQ92
FunCoupENSG00000172301
BioGRIDCOPRS
STRING (EMBL)COPRS
ZODIACCOPRS
Ontologies - Pathways
QuickGOQ9NQ92
Ontology : AmiGOprotein binding  nucleus  nucleoplasm  cytosol  plasma membrane  transcription, DNA-templated  regulation of transcription, DNA-templated  muscle organ development  histone binding  histone H4-R3 methylation  
Ontology : EGO-EBIprotein binding  nucleus  nucleoplasm  cytosol  plasma membrane  transcription, DNA-templated  regulation of transcription, DNA-templated  muscle organ development  histone binding  histone H4-R3 methylation  
NDEx NetworkCOPRS
Atlas of Cancer Signalling NetworkCOPRS
Wikipedia pathwaysCOPRS
Orthology - Evolution
OrthoDB55352
GeneTree (enSembl)ENSG00000172301
Phylogenetic Trees/Animal Genes : TreeFamCOPRS
HOVERGENQ9NQ92
HOGENOMQ9NQ92
Homologs : HomoloGeneCOPRS
Homology/Alignments : Family Browser (UCSC)COPRS
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerCOPRS [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)COPRS
dbVarCOPRS
ClinVarCOPRS
1000_GenomesCOPRS 
Exome Variant ServerCOPRS
ExAC (Exome Aggregation Consortium)COPRS (select the gene name)
Genetic variants : HAPMAP55352
Genomic Variants (DGV)COPRS [DGVbeta]
DECIPHERCOPRS [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisCOPRS 
Mutations
ICGC Data PortalCOPRS 
TCGA Data PortalCOPRS 
Broad Tumor PortalCOPRS
OASIS PortalCOPRS [ Somatic mutations - Copy number]
Mutations and Diseases : HGMDCOPRS
BioMutasearch COPRS
DgiDB (Drug Gene Interaction Database)COPRS
DoCM (Curated mutations)COPRS (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)COPRS (select a term)
intoGenCOPRS
Cancer3DCOPRS(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenCOPRS
Genetic Testing Registry COPRS
NextProtQ9NQ92 [Medical]
TSGene55352
GENETestsCOPRS
Target ValidationCOPRS
Huge Navigator COPRS [HugePedia]
snp3D : Map Gene to Disease55352
BioCentury BCIQCOPRS
ClinGenCOPRS
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD55352
Chemical/Pharm GKB GenePA143485403
Clinical trialCOPRS
Miscellaneous
canSAR (ICR)COPRS (select the gene name)
Probes
Litterature
PubMed16 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineCOPRS
EVEXCOPRS
GoPubMedCOPRS
iHOPCOPRS
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Sep 18 13:05:14 CEST 2017

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