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COPRS (coordinator of PRMT5 and differentiation stimulator)

Identity

Alias (NCBI)C17orf79
COPR5
HSA272196
TTP1
HGNC (Hugo) COPRS
HGNC Alias symbTTP1
HSA272196
COPR5
HGNC Alias namecooperator of PRMT5
HGNC Previous nameC17orf79
HGNC Previous namechromosome 17 open reading frame 79
 coordinator of PRMT5, differentiation stimulator
LocusID (NCBI) 55352
Atlas_Id 62023
Location 17q11.2  [Link to chromosome band 17q11]
Location_base_pair Starts at 31851865 and ends at 31859307 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)COPRS   28848
Cards
Entrez_Gene (NCBI)COPRS  55352  coordinator of PRMT5 and differentiation stimulator
AliasesC17orf79; COPR5; HSA272196; TTP1
GeneCards (Weizmann)COPRS
Ensembl hg19 (Hinxton)ENSG00000172301 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000172301 [Gene_View]  ENSG00000172301 [Sequence]  chr17:31851865-31859307 [Contig_View]  COPRS [Vega]
ICGC DataPortalENSG00000172301
TCGA cBioPortalCOPRS
AceView (NCBI)COPRS
Genatlas (Paris)COPRS
WikiGenes55352
SOURCE (Princeton)COPRS
Genetics Home Reference (NIH)COPRS
Genomic and cartography
GoldenPath hg38 (UCSC)COPRS  -     chr17:31851865-31859307 -  17q11.2   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)COPRS  -     17q11.2   [Description]    (hg19-Feb_2009)
GoldenPathCOPRS - 17q11.2 [CytoView hg19]  COPRS - 17q11.2 [CytoView hg38]
ImmunoBaseENSG00000172301
genome Data Viewer NCBICOPRS [Mapview hg19]  
Gene and transcription
Genbank (Entrez)AF407672 AJ272196 AK024772 BC012386 BC035483
RefSeq transcript (Entrez)NM_001330176 NM_018405
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)COPRS
Alternative Splicing GalleryENSG00000172301
Gene ExpressionCOPRS [ NCBI-GEO ]   COPRS [ EBI - ARRAY_EXPRESS ]   COPRS [ SEEK ]   COPRS [ MEM ]
Gene Expression Viewer (FireBrowse)COPRS [ Firebrowse - Broad ]
GenevisibleExpression of COPRS in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)55352
GTEX Portal (Tissue expression)COPRS
Human Protein AtlasENSG00000172301-COPRS [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9NQ92   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9NQ92  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9NQ92
Splice isoforms : SwissVarQ9NQ92
PhosPhoSitePlusQ9NQ92
Domains : Interpro (EBI)COPR5   
Domain families : Pfam (Sanger)COPR5 (PF15340)   
Domain families : Pfam (NCBI)pfam15340   
Conserved Domain (NCBI)COPRS
DMDM Disease mutations55352
Blocks (Seattle)COPRS
SuperfamilyQ9NQ92
Human Protein Atlas [tissue]ENSG00000172301-COPRS [tissue]
Peptide AtlasQ9NQ92
HPRD13675
IPIIPI00161600   IPI00746088   
Protein Interaction databases
DIP (DOE-UCLA)Q9NQ92
IntAct (EBI)Q9NQ92
FunCoupENSG00000172301
BioGRIDCOPRS
STRING (EMBL)COPRS
ZODIACCOPRS
Ontologies - Pathways
QuickGOQ9NQ92
Ontology : AmiGOprotein binding  nucleus  nucleus  nucleoplasm  nucleoplasm  cytosol  plasma membrane  muscle organ development  histone binding  histone binding  histone H4-R3 methylation  histone H4-R3 methylation  
Ontology : EGO-EBIprotein binding  nucleus  nucleus  nucleoplasm  nucleoplasm  cytosol  plasma membrane  muscle organ development  histone binding  histone binding  histone H4-R3 methylation  histone H4-R3 methylation  
NDEx NetworkCOPRS
Atlas of Cancer Signalling NetworkCOPRS
Wikipedia pathwaysCOPRS
Orthology - Evolution
OrthoDB55352
GeneTree (enSembl)ENSG00000172301
Phylogenetic Trees/Animal Genes : TreeFamCOPRS
HOGENOMQ9NQ92
Homologs : HomoloGeneCOPRS
Homology/Alignments : Family Browser (UCSC)COPRS
Gene fusions - Rearrangements
Fusion : QuiverCOPRS
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerCOPRS [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)COPRS
dbVarCOPRS
ClinVarCOPRS
1000_GenomesCOPRS 
Exome Variant ServerCOPRS
GNOMAD BrowserENSG00000172301
Varsome BrowserCOPRS
Genetic variants : HAPMAP55352
Genomic Variants (DGV)COPRS [DGVbeta]
DECIPHERCOPRS [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisCOPRS 
Mutations
ICGC Data PortalCOPRS 
TCGA Data PortalCOPRS 
Broad Tumor PortalCOPRS
OASIS PortalCOPRS [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICCOPRS  [overview]  [genome browser]  [tissue]  [distribution]  
Somatic Mutations in Cancer : COSMIC3DCOPRS
Mutations and Diseases : HGMDCOPRS
BioMutasearch COPRS
DgiDB (Drug Gene Interaction Database)COPRS
DoCM (Curated mutations)COPRS (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)COPRS (select a term)
intoGenCOPRS
Cancer3DCOPRS(select the gene name)
Impact of mutations[PolyPhen2] [Provean] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
DisGeNETCOPRS
MedgenCOPRS
Genetic Testing Registry COPRS
NextProtQ9NQ92 [Medical]
TSGene55352
GENETestsCOPRS
Target ValidationCOPRS
Huge Navigator COPRS [HugePedia]
snp3D : Map Gene to Disease55352
BioCentury BCIQCOPRS
ClinGenCOPRS
Clinical trials, drugs, therapy
Protein Interactions : CTD55352
Pharm GKB GenePA143485403
Clinical trialCOPRS
Miscellaneous
canSAR (ICR)COPRS (select the gene name)
HarmonizomeCOPRS
DataMed IndexCOPRS
Probes
Litterature
PubMed24 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineCOPRS
EVEXCOPRS
GoPubMedCOPRS
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Thu Jul 16 15:52:07 CEST 2020

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