Atlas of Genetics and Cytogenetics in Oncology and Haematology


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COPS7B (COP9 signalosome subunit 7B)

Identity

Alias_namesCOP9 (constitutive photomorphogenic, Arabidopsis, homolog) subunit 7B
COP9 constitutive photomorphogenic homolog subunit 7B (Arabidopsis)
Alias_symbol (synonym)CSN7B
Other aliasSGN7b
HGNC (Hugo) COPS7B
LocusID (NCBI) 64708
Atlas_Id 47495
Location 2q37.1  [Link to chromosome band 2q37]
Location_base_pair Starts at 231781671 and ends at 231809253 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
CAMK2D (4q26) / COPS7B (2q37.1)COPS7B (2q37.1) / COPS7B (2q37.1)COPS7B (2q37.1) / MBNL2 (13q32.1)
COPS7B (2q37.1) / RAB13 (1q21.3)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)COPS7B   16760
Cards
Entrez_Gene (NCBI)COPS7B  64708  COP9 signalosome subunit 7B
AliasesCSN7B; SGN7b
GeneCards (Weizmann)COPS7B
Ensembl hg19 (Hinxton)ENSG00000144524 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000144524 [Gene_View]  chr2:231781671-231809253 [Contig_View]  COPS7B [Vega]
ICGC DataPortalENSG00000144524
TCGA cBioPortalCOPS7B
AceView (NCBI)COPS7B
Genatlas (Paris)COPS7B
WikiGenes64708
SOURCE (Princeton)COPS7B
Genetics Home Reference (NIH)COPS7B
Genomic and cartography
GoldenPath hg38 (UCSC)COPS7B  -     chr2:231781671-231809253 +  2q37.1   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)COPS7B  -     2q37.1   [Description]    (hg19-Feb_2009)
EnsemblCOPS7B - 2q37.1 [CytoView hg19]  COPS7B - 2q37.1 [CytoView hg38]
Mapping of homologs : NCBICOPS7B [Mapview hg19]  COPS7B [Mapview hg38]
OMIM616010   
Gene and transcription
Genbank (Entrez)AA126041 AK022674 AK024273 AK098334 AK124133
RefSeq transcript (Entrez)NM_001282949 NM_001282950 NM_001282951 NM_001282952 NM_001308381 NM_022730
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)COPS7B
Cluster EST : UnigeneHs.611663 [ NCBI ]
CGAP (NCI)Hs.611663
Alternative Splicing GalleryENSG00000144524
Gene ExpressionCOPS7B [ NCBI-GEO ]   COPS7B [ EBI - ARRAY_EXPRESS ]   COPS7B [ SEEK ]   COPS7B [ MEM ]
Gene Expression Viewer (FireBrowse)COPS7B [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)64708
GTEX Portal (Tissue expression)COPS7B
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9H9Q2   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9H9Q2  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9H9Q2
Splice isoforms : SwissVarQ9H9Q2
PhosPhoSitePlusQ9H9Q2
Domains : Interpro (EBI)Csn7b    PCI_dom   
Domain families : Pfam (Sanger)PCI (PF01399)   
Domain families : Pfam (NCBI)pfam01399   
Domain families : Smart (EMBL)PINT (SM00088)  
Conserved Domain (NCBI)COPS7B
DMDM Disease mutations64708
Blocks (Seattle)COPS7B
SuperfamilyQ9H9Q2
Human Protein AtlasENSG00000144524
Peptide AtlasQ9H9Q2
HPRD09889
IPIIPI00009301   IPI00478990   IPI00445209   IPI00916504   IPI00916095   IPI00916219   IPI00917140   IPI00916690   IPI00917467   IPI00916369   IPI00917481   IPI00917012   IPI00915956   IPI00917804   
Protein Interaction databases
DIP (DOE-UCLA)Q9H9Q2
IntAct (EBI)Q9H9Q2
FunCoupENSG00000144524
BioGRIDCOPS7B
STRING (EMBL)COPS7B
ZODIACCOPS7B
Ontologies - Pathways
QuickGOQ9H9Q2
Ontology : AmiGOprotein deneddylation  nucleotide-excision repair, DNA damage recognition  protein binding  nucleoplasm  nucleoplasm  cytosol  transcription-coupled nucleotide-excision repair  COP9 signalosome  
Ontology : EGO-EBIprotein deneddylation  nucleotide-excision repair, DNA damage recognition  protein binding  nucleoplasm  nucleoplasm  cytosol  transcription-coupled nucleotide-excision repair  COP9 signalosome  
NDEx NetworkCOPS7B
Atlas of Cancer Signalling NetworkCOPS7B
Wikipedia pathwaysCOPS7B
Orthology - Evolution
OrthoDB64708
GeneTree (enSembl)ENSG00000144524
Phylogenetic Trees/Animal Genes : TreeFamCOPS7B
HOVERGENQ9H9Q2
HOGENOMQ9H9Q2
Homologs : HomoloGeneCOPS7B
Homology/Alignments : Family Browser (UCSC)COPS7B
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerCOPS7B [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)COPS7B
dbVarCOPS7B
ClinVarCOPS7B
1000_GenomesCOPS7B 
Exome Variant ServerCOPS7B
ExAC (Exome Aggregation Consortium)COPS7B (select the gene name)
Genetic variants : HAPMAP64708
Genomic Variants (DGV)COPS7B [DGVbeta]
DECIPHERCOPS7B [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisCOPS7B 
Mutations
ICGC Data PortalCOPS7B 
TCGA Data PortalCOPS7B 
Broad Tumor PortalCOPS7B
OASIS PortalCOPS7B [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICCOPS7B  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDCOPS7B
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch COPS7B
DgiDB (Drug Gene Interaction Database)COPS7B
DoCM (Curated mutations)COPS7B (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)COPS7B (select a term)
intoGenCOPS7B
Cancer3DCOPS7B(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM616010   
Orphanet
MedgenCOPS7B
Genetic Testing Registry COPS7B
NextProtQ9H9Q2 [Medical]
TSGene64708
GENETestsCOPS7B
Target ValidationCOPS7B
Huge Navigator COPS7B [HugePedia]
snp3D : Map Gene to Disease64708
BioCentury BCIQCOPS7B
ClinGenCOPS7B
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD64708
Chemical/Pharm GKB GenePA26759
Clinical trialCOPS7B
Miscellaneous
canSAR (ICR)COPS7B (select the gene name)
Probes
Litterature
PubMed40 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineCOPS7B
EVEXCOPS7B
GoPubMedCOPS7B
iHOPCOPS7B
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Sep 25 19:03:22 CEST 2017

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