Atlas of Genetics and Cytogenetics in Oncology and Haematology


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COPS9 (COP9 signalosome subunit 9)

Identity

Alias_namesMYEOV2
myeloma overexpressed 2
Alias_symbol (synonym)CSNAP
Other alias
HGNC (Hugo) COPS9
LocusID (NCBI) 150678
Atlas_Id 56610
Location 2q37.3  [Link to chromosome band 2q37]
Location_base_pair Starts at 240130825 and ends at 240136330 bp from pter ( according to hg38-Dec_2013)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)COPS9   21314
Cards
Entrez_Gene (NCBI)COPS9  150678  COP9 signalosome subunit 9
AliasesCSNAP; MYEOV2
GeneCards (Weizmann)COPS9
Ensembl hg19 (Hinxton)ENSG00000172428 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000172428 [Gene_View]  chr2:240130825-240136330 [Contig_View]  COPS9 [Vega]
ICGC DataPortalENSG00000172428
TCGA cBioPortalCOPS9
AceView (NCBI)COPS9
Genatlas (Paris)COPS9
WikiGenes150678
SOURCE (Princeton)COPS9
Genetics Home Reference (NIH)COPS9
Genomic and cartography
GoldenPath hg38 (UCSC)COPS9  -     chr2:240130825-240136330 -  2q37.3   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)COPS9  -     2q37.3   [Description]    (hg19-Feb_2009)
EnsemblCOPS9 - 2q37.3 [CytoView hg19]  COPS9 - 2q37.3 [CytoView hg38]
Mapping of homologs : NCBICOPS9 [Mapview hg19]  COPS9 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AF453951 AF487338 BC033955 BC140452 CN304277
RefSeq transcript (Entrez)NM_001163424 NM_138336
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)COPS9
Cluster EST : UnigeneHs.293884 [ NCBI ]
CGAP (NCI)Hs.293884
Alternative Splicing GalleryENSG00000172428
Gene ExpressionCOPS9 [ NCBI-GEO ]   COPS9 [ EBI - ARRAY_EXPRESS ]   COPS9 [ SEEK ]   COPS9 [ MEM ]
Gene Expression Viewer (FireBrowse)COPS9 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)150678
GTEX Portal (Tissue expression)COPS9
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ8WXC6   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ8WXC6  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ8WXC6
Splice isoforms : SwissVarQ8WXC6
PhosPhoSitePlusQ8WXC6
Domains : Interpro (EBI)MYEOV2   
Domain families : Pfam (Sanger)MYEOV2 (PF15004)   
Domain families : Pfam (NCBI)pfam15004   
Conserved Domain (NCBI)COPS9
DMDM Disease mutations150678
Blocks (Seattle)COPS9
SuperfamilyQ8WXC6
Human Protein AtlasENSG00000172428
Peptide AtlasQ8WXC6
HPRD17306
IPIIPI00103507   IPI00890829   
Protein Interaction databases
DIP (DOE-UCLA)Q8WXC6
IntAct (EBI)Q8WXC6
FunCoupENSG00000172428
BioGRIDCOPS9
STRING (EMBL)COPS9
ZODIACCOPS9
Ontologies - Pathways
QuickGOQ8WXC6
Ontology : AmiGOnuclear chromatin  protein binding  nucleus  nucleoplasm  cytoplasm  COP9 signalosome  positive regulation of cell proliferation  cellular response to UV  
Ontology : EGO-EBInuclear chromatin  protein binding  nucleus  nucleoplasm  cytoplasm  COP9 signalosome  positive regulation of cell proliferation  cellular response to UV  
NDEx NetworkCOPS9
Atlas of Cancer Signalling NetworkCOPS9
Wikipedia pathwaysCOPS9
Orthology - Evolution
OrthoDB150678
GeneTree (enSembl)ENSG00000172428
Phylogenetic Trees/Animal Genes : TreeFamCOPS9
HOVERGENQ8WXC6
HOGENOMQ8WXC6
Homologs : HomoloGeneCOPS9
Homology/Alignments : Family Browser (UCSC)COPS9
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerCOPS9 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)COPS9
dbVarCOPS9
ClinVarCOPS9
1000_GenomesCOPS9 
Exome Variant ServerCOPS9
ExAC (Exome Aggregation Consortium)COPS9 (select the gene name)
Genetic variants : HAPMAP150678
Genomic Variants (DGV)COPS9 [DGVbeta]
DECIPHERCOPS9 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisCOPS9 
Mutations
ICGC Data PortalCOPS9 
TCGA Data PortalCOPS9 
Broad Tumor PortalCOPS9
OASIS PortalCOPS9 [ Somatic mutations - Copy number]
Mutations and Diseases : HGMDCOPS9
BioMutasearch COPS9
DgiDB (Drug Gene Interaction Database)COPS9
DoCM (Curated mutations)COPS9 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)COPS9 (select a term)
intoGenCOPS9
Cancer3DCOPS9(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenCOPS9
Genetic Testing Registry COPS9
NextProtQ8WXC6 [Medical]
TSGene150678
GENETestsCOPS9
Target ValidationCOPS9
Huge Navigator COPS9 [HugePedia]
snp3D : Map Gene to Disease150678
BioCentury BCIQCOPS9
ClinGenCOPS9
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD150678
Chemical/Pharm GKB GenePA142671302
Clinical trialCOPS9
Miscellaneous
canSAR (ICR)COPS9 (select the gene name)
Probes
Litterature
PubMed9 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineCOPS9
EVEXCOPS9
GoPubMedCOPS9
iHOPCOPS9
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Wed Jun 7 12:29:14 CEST 2017

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