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COPZ2 (coatomer protein complex subunit zeta 2)

Identity

Alias_namescoatomer protein complex
Alias_symbol (synonym)MGC23008
Other aliaszeta2-COP
HGNC (Hugo) COPZ2
LocusID (NCBI) 51226
Atlas_Id 52449
Location 17q21.32  [Link to chromosome band 17q21]
Location_base_pair Starts at 48026167 and ends at 48037806 bp from pter ( according to hg38-Dec_2013)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)COPZ2   19356
Cards
Entrez_Gene (NCBI)COPZ2  51226  coatomer protein complex subunit zeta 2
Aliaseszeta2-COP
GeneCards (Weizmann)COPZ2
Ensembl hg19 (Hinxton)ENSG00000005243 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000005243 [Gene_View]  chr17:48026167-48037806 [Contig_View]  COPZ2 [Vega]
ICGC DataPortalENSG00000005243
TCGA cBioPortalCOPZ2
AceView (NCBI)COPZ2
Genatlas (Paris)COPZ2
WikiGenes51226
SOURCE (Princeton)COPZ2
Genetics Home Reference (NIH)COPZ2
Genomic and cartography
GoldenPath hg38 (UCSC)COPZ2  -     chr17:48026167-48037806 -  17q21.32   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)COPZ2  -     17q21.32   [Description]    (hg19-Feb_2009)
EnsemblCOPZ2 - 17q21.32 [CytoView hg19]  COPZ2 - 17q21.32 [CytoView hg38]
Mapping of homologs : NCBICOPZ2 [Mapview hg19]  COPZ2 [Mapview hg38]
OMIM615526   
Gene and transcription
Genbank (Entrez)AB037938 AB047849 BC015924 BQ002984 BQ576336
RefSeq transcript (Entrez)NM_016429
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)COPZ2
Cluster EST : UnigeneHs.408434 [ NCBI ]
CGAP (NCI)Hs.408434
Alternative Splicing GalleryENSG00000005243
Gene ExpressionCOPZ2 [ NCBI-GEO ]   COPZ2 [ EBI - ARRAY_EXPRESS ]   COPZ2 [ SEEK ]   COPZ2 [ MEM ]
Gene Expression Viewer (FireBrowse)COPZ2 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)51226
GTEX Portal (Tissue expression)COPZ2
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9P299   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9P299  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9P299
Splice isoforms : SwissVarQ9P299
PhosPhoSitePlusQ9P299
Domains : Interpro (EBI)AP_mu_sigma_su    Longin-like_dom   
Domain families : Pfam (Sanger)Clat_adaptor_s (PF01217)   
Domain families : Pfam (NCBI)pfam01217   
Conserved Domain (NCBI)COPZ2
DMDM Disease mutations51226
Blocks (Seattle)COPZ2
SuperfamilyQ9P299
Human Protein AtlasENSG00000005243
Peptide AtlasQ9P299
HPRD16739
IPIIPI00009274   
Protein Interaction databases
DIP (DOE-UCLA)Q9P299
IntAct (EBI)Q9P299
FunCoupENSG00000005243
BioGRIDCOPZ2
STRING (EMBL)COPZ2
ZODIACCOPZ2
Ontologies - Pathways
QuickGOQ9P299
Ontology : AmiGOGolgi membrane  endoplasmic reticulum membrane  cis-Golgi network  cytosol  intracellular protein transport  ER to Golgi vesicle-mediated transport  retrograde vesicle-mediated transport, Golgi to ER  COPI vesicle coat  COPI vesicle coat  transport vesicle  endoplasmic reticulum-Golgi intermediate compartment membrane  
Ontology : EGO-EBIGolgi membrane  endoplasmic reticulum membrane  cis-Golgi network  cytosol  intracellular protein transport  ER to Golgi vesicle-mediated transport  retrograde vesicle-mediated transport, Golgi to ER  COPI vesicle coat  COPI vesicle coat  transport vesicle  endoplasmic reticulum-Golgi intermediate compartment membrane  
NDEx NetworkCOPZ2
Atlas of Cancer Signalling NetworkCOPZ2
Wikipedia pathwaysCOPZ2
Orthology - Evolution
OrthoDB51226
GeneTree (enSembl)ENSG00000005243
Phylogenetic Trees/Animal Genes : TreeFamCOPZ2
HOVERGENQ9P299
HOGENOMQ9P299
Homologs : HomoloGeneCOPZ2
Homology/Alignments : Family Browser (UCSC)COPZ2
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerCOPZ2 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)COPZ2
dbVarCOPZ2
ClinVarCOPZ2
1000_GenomesCOPZ2 
Exome Variant ServerCOPZ2
ExAC (Exome Aggregation Consortium)COPZ2 (select the gene name)
Genetic variants : HAPMAP51226
Genomic Variants (DGV)COPZ2 [DGVbeta]
DECIPHERCOPZ2 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisCOPZ2 
Mutations
ICGC Data PortalCOPZ2 
TCGA Data PortalCOPZ2 
Broad Tumor PortalCOPZ2
OASIS PortalCOPZ2 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICCOPZ2  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDCOPZ2
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch COPZ2
DgiDB (Drug Gene Interaction Database)COPZ2
DoCM (Curated mutations)COPZ2 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)COPZ2 (select a term)
intoGenCOPZ2
Cancer3DCOPZ2(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM615526   
Orphanet
MedgenCOPZ2
Genetic Testing Registry COPZ2
NextProtQ9P299 [Medical]
TSGene51226
GENETestsCOPZ2
Huge Navigator COPZ2 [HugePedia]
snp3D : Map Gene to Disease51226
BioCentury BCIQCOPZ2
ClinGenCOPZ2
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD51226
Chemical/Pharm GKB GenePA134862698
Clinical trialCOPZ2
Miscellaneous
canSAR (ICR)COPZ2 (select the gene name)
Probes
Litterature
PubMed10 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineCOPZ2
EVEXCOPZ2
GoPubMedCOPZ2
iHOPCOPZ2
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Fri May 19 12:11:27 CEST 2017

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