Atlas of Genetics and Cytogenetics in Oncology and Haematology


Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

X Y 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 NA

COQ10B (coenzyme Q10B)

Identity

Alias_namescoenzyme Q10 homolog B (yeast)
coenzyme Q10 homolog B (S. cerevisiae)
Alias_symbol (synonym)FLJ13448
Other alias-
HGNC (Hugo) COQ10B
LocusID (NCBI) 80219
Atlas_Id 62024
Location 2q33.1  [Link to chromosome band 2q33]
Location_base_pair Starts at 197453423 and ends at 197475309 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
COQ10B (2q33.1) / KIF3A (5q31.1)FOXP1 (3p13) / COQ10B (2q33.1)MALAT1 (11q13.1) / COQ10B (2q33.1)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)COQ10B   25819
Cards
Entrez_Gene (NCBI)COQ10B  80219  coenzyme Q10B
Aliases
GeneCards (Weizmann)COQ10B
Ensembl hg19 (Hinxton)ENSG00000115520 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000115520 [Gene_View]  chr2:197453423-197475309 [Contig_View]  COQ10B [Vega]
ICGC DataPortalENSG00000115520
TCGA cBioPortalCOQ10B
AceView (NCBI)COQ10B
Genatlas (Paris)COQ10B
WikiGenes80219
SOURCE (Princeton)COQ10B
Genetics Home Reference (NIH)COQ10B
Genomic and cartography
GoldenPath hg38 (UCSC)COQ10B  -     chr2:197453423-197475309 +  2q33.1   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)COQ10B  -     2q33.1   [Description]    (hg19-Feb_2009)
EnsemblCOQ10B - 2q33.1 [CytoView hg19]  COQ10B - 2q33.1 [CytoView hg38]
Mapping of homologs : NCBICOQ10B [Mapview hg19]  COQ10B [Mapview hg38]
Gene and transcription
Genbank (Entrez)AA232326 AK023510 AK294093 AK308977 BC022453
RefSeq transcript (Entrez)NM_001320818 NM_001320819 NM_001320820 NM_025147
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)COQ10B
Cluster EST : UnigeneHs.741586 [ NCBI ]
CGAP (NCI)Hs.741586
Alternative Splicing GalleryENSG00000115520
Gene ExpressionCOQ10B [ NCBI-GEO ]   COQ10B [ EBI - ARRAY_EXPRESS ]   COQ10B [ SEEK ]   COQ10B [ MEM ]
Gene Expression Viewer (FireBrowse)COQ10B [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)80219
GTEX Portal (Tissue expression)COQ10B
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9H8M1   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9H8M1  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9H8M1
Splice isoforms : SwissVarQ9H8M1
PhosPhoSitePlusQ9H8M1
Domains : Interpro (EBI)COQ10_START    START-like_dom   
Domain families : Pfam (Sanger)Polyketide_cyc (PF03364)   
Domain families : Pfam (NCBI)pfam03364   
Conserved Domain (NCBI)COQ10B
DMDM Disease mutations80219
Blocks (Seattle)COQ10B
SuperfamilyQ9H8M1
Human Protein AtlasENSG00000115520
Peptide AtlasQ9H8M1
HPRD08582
IPIIPI00018628   IPI00916273   IPI00915875   
Protein Interaction databases
DIP (DOE-UCLA)Q9H8M1
IntAct (EBI)Q9H8M1
FunCoupENSG00000115520
BioGRIDCOQ10B
STRING (EMBL)COQ10B
ZODIACCOQ10B
Ontologies - Pathways
QuickGOQ9H8M1
Ontology : AmiGOmitochondrion  mitochondrial inner membrane  ubiquinone biosynthetic process  cellular respiration  ubiquinone binding  
Ontology : EGO-EBImitochondrion  mitochondrial inner membrane  ubiquinone biosynthetic process  cellular respiration  ubiquinone binding  
NDEx NetworkCOQ10B
Atlas of Cancer Signalling NetworkCOQ10B
Wikipedia pathwaysCOQ10B
Orthology - Evolution
OrthoDB80219
GeneTree (enSembl)ENSG00000115520
Phylogenetic Trees/Animal Genes : TreeFamCOQ10B
HOVERGENQ9H8M1
HOGENOMQ9H8M1
Homologs : HomoloGeneCOQ10B
Homology/Alignments : Family Browser (UCSC)COQ10B
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerCOQ10B [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)COQ10B
dbVarCOQ10B
ClinVarCOQ10B
1000_GenomesCOQ10B 
Exome Variant ServerCOQ10B
ExAC (Exome Aggregation Consortium)COQ10B (select the gene name)
Genetic variants : HAPMAP80219
Genomic Variants (DGV)COQ10B [DGVbeta]
DECIPHERCOQ10B [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisCOQ10B 
Mutations
ICGC Data PortalCOQ10B 
TCGA Data PortalCOQ10B 
Broad Tumor PortalCOQ10B
OASIS PortalCOQ10B [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICCOQ10B  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDCOQ10B
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
LOVD (Leiden Open Variation Database)MSeqDR-LSDB Mitochondrial Disease Locus Specific Database
BioMutasearch COQ10B
DgiDB (Drug Gene Interaction Database)COQ10B
DoCM (Curated mutations)COQ10B (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)COQ10B (select a term)
intoGenCOQ10B
Cancer3DCOQ10B(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenCOQ10B
Genetic Testing Registry COQ10B
NextProtQ9H8M1 [Medical]
TSGene80219
GENETestsCOQ10B
Target ValidationCOQ10B
Huge Navigator COQ10B [HugePedia]
snp3D : Map Gene to Disease80219
BioCentury BCIQCOQ10B
ClinGenCOQ10B
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD80219
Chemical/Pharm GKB GenePA143485440
Clinical trialCOQ10B
Miscellaneous
canSAR (ICR)COQ10B (select the gene name)
Probes
Litterature
PubMed8 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineCOQ10B
EVEXCOQ10B
GoPubMedCOQ10B
iHOPCOQ10B
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Wed Jun 7 15:44:19 CEST 2017

Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

For comments and suggestions or contributions, please contact us

jlhuret@AtlasGeneticsOncology.org.