Atlas of Genetics and Cytogenetics in Oncology and Haematology


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COQ4 (coenzyme Q4)

Identity

Alias_namescoenzyme Q4 homolog (yeast)
coenzyme Q4 homolog (S. cerevisiae)
Alias_symbol (synonym)CGI-92
Other aliasCOQ10D7
HGNC (Hugo) COQ4
LocusID (NCBI) 51117
Atlas_Id 62026
Location 9q34.11  [Link to chromosome band 9q34]
Location_base_pair Starts at 128322508 and ends at 128334072 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
COQ4 (9q34.11) / COQ4 (9q34.11)COQ4 (9q34.11) / DNM1 (9q34.11)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)COQ4   19693
Cards
Entrez_Gene (NCBI)COQ4  51117  coenzyme Q4
AliasesCGI-92; COQ10D7
GeneCards (Weizmann)COQ4
Ensembl hg19 (Hinxton)ENSG00000167113 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000167113 [Gene_View]  chr9:128322508-128334072 [Contig_View]  COQ4 [Vega]
ICGC DataPortalENSG00000167113
TCGA cBioPortalCOQ4
AceView (NCBI)COQ4
Genatlas (Paris)COQ4
WikiGenes51117
SOURCE (Princeton)COQ4
Genetics Home Reference (NIH)COQ4
Genomic and cartography
GoldenPath hg38 (UCSC)COQ4  -     chr9:128322508-128334072 +  9q34.11   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)COQ4  -     9q34.11   [Description]    (hg19-Feb_2009)
EnsemblCOQ4 - 9q34.11 [CytoView hg19]  COQ4 - 9q34.11 [CytoView hg38]
Mapping of homologs : NCBICOQ4 [Mapview hg19]  COQ4 [Mapview hg38]
OMIM612898   616276   
Gene and transcription
Genbank (Entrez)AF151850 AK025376 AK095083 AK128853 AK301333
RefSeq transcript (Entrez)NM_001305942 NM_016035
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)COQ4
Cluster EST : UnigeneHs.98541 [ NCBI ]
CGAP (NCI)Hs.98541
Alternative Splicing GalleryENSG00000167113
Gene ExpressionCOQ4 [ NCBI-GEO ]   COQ4 [ EBI - ARRAY_EXPRESS ]   COQ4 [ SEEK ]   COQ4 [ MEM ]
Gene Expression Viewer (FireBrowse)COQ4 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)51117
GTEX Portal (Tissue expression)COQ4
Human Protein AtlasENSG00000167113-COQ4 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9Y3A0   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9Y3A0  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9Y3A0
Splice isoforms : SwissVarQ9Y3A0
PhosPhoSitePlusQ9Y3A0
Domains : Interpro (EBI)Coq4    Coq4_euk   
Domain families : Pfam (Sanger)Coq4 (PF05019)   
Domain families : Pfam (NCBI)pfam05019   
Conserved Domain (NCBI)COQ4
DMDM Disease mutations51117
Blocks (Seattle)COQ4
SuperfamilyQ9Y3A0
Human Protein Atlas [tissue]ENSG00000167113-COQ4 [tissue]
Peptide AtlasQ9Y3A0
HPRD16741
IPIIPI00294469   IPI00926812   IPI00983050   IPI00513954   
Protein Interaction databases
DIP (DOE-UCLA)Q9Y3A0
IntAct (EBI)Q9Y3A0
FunCoupENSG00000167113
BioGRIDCOQ4
STRING (EMBL)COQ4
ZODIACCOQ4
Ontologies - Pathways
QuickGOQ9Y3A0
Ontology : AmiGOmitochondrion  mitochondrion  mitochondrial inner membrane  ubiquinone biosynthetic process  
Ontology : EGO-EBImitochondrion  mitochondrion  mitochondrial inner membrane  ubiquinone biosynthetic process  
NDEx NetworkCOQ4
Atlas of Cancer Signalling NetworkCOQ4
Wikipedia pathwaysCOQ4
Orthology - Evolution
OrthoDB51117
GeneTree (enSembl)ENSG00000167113
Phylogenetic Trees/Animal Genes : TreeFamCOQ4
HOVERGENQ9Y3A0
HOGENOMQ9Y3A0
Homologs : HomoloGeneCOQ4
Homology/Alignments : Family Browser (UCSC)COQ4
Gene fusions - Rearrangements
Fusion: Tumor Portal COQ4
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerCOQ4 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)COQ4
dbVarCOQ4
ClinVarCOQ4
1000_GenomesCOQ4 
Exome Variant ServerCOQ4
ExAC (Exome Aggregation Consortium)ENSG00000167113
GNOMAD BrowserENSG00000167113
Genetic variants : HAPMAP51117
Genomic Variants (DGV)COQ4 [DGVbeta]
DECIPHERCOQ4 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisCOQ4 
Mutations
ICGC Data PortalCOQ4 
TCGA Data PortalCOQ4 
Broad Tumor PortalCOQ4
OASIS PortalCOQ4 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICCOQ4  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDCOQ4
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
LOVD (Leiden Open Variation Database)MSeqDR-LSDB Mitochondrial Disease Locus Specific Database
BioMutasearch COQ4
DgiDB (Drug Gene Interaction Database)COQ4
DoCM (Curated mutations)COQ4 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)COQ4 (select a term)
intoGenCOQ4
Cancer3DCOQ4(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM612898    616276   
Orphanet23703   
MedgenCOQ4
Genetic Testing Registry COQ4
NextProtQ9Y3A0 [Medical]
TSGene51117
GENETestsCOQ4
Target ValidationCOQ4
Huge Navigator COQ4 [HugePedia]
snp3D : Map Gene to Disease51117
BioCentury BCIQCOQ4
ClinGenCOQ4
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD51117
Chemical/Pharm GKB GenePA134957951
Clinical trialCOQ4
Miscellaneous
canSAR (ICR)COQ4 (select the gene name)
Probes
Litterature
PubMed19 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineCOQ4
EVEXCOQ4
GoPubMedCOQ4
iHOPCOQ4
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Thu Nov 9 11:43:12 CET 2017

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