Atlas of Genetics and Cytogenetics in Oncology and Haematology


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COQ7 (coenzyme Q7 homolog, ubiquinone (yeast))

Identity

Alias_namescoenzyme Q, 7 (rat, yeast) homolog
coenzyme Q7 homolog, ubiquinone (yeast)
Alias_symbol (synonym)CLK-1
CAT5
Other aliasCLK1
HGNC (Hugo) COQ7
LocusID (NCBI) 10229
Atlas_Id 62029
Location 16p12.3  [Link to chromosome band 16p12]
Location_base_pair Starts at 19079239 and ends at 19091417 bp from pter ( according to hg19-Feb_2009)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)COQ7   2244
Cards
Entrez_Gene (NCBI)COQ7  10229  coenzyme Q7 homolog, ubiquinone (yeast)
AliasesCAT5; CLK-1; CLK1
GeneCards (Weizmann)COQ7
Ensembl hg19 (Hinxton)ENSG00000167186 [Gene_View]  chr16:19079239-19091417 [Contig_View]  COQ7 [Vega]
Ensembl hg38 (Hinxton)ENSG00000167186 [Gene_View]  chr16:19079239-19091417 [Contig_View]  COQ7 [Vega]
ICGC DataPortalENSG00000167186
TCGA cBioPortalCOQ7
AceView (NCBI)COQ7
Genatlas (Paris)COQ7
WikiGenes10229
SOURCE (Princeton)COQ7
Genetics Home Reference (NIH)COQ7
Genomic and cartography
GoldenPath hg19 (UCSC)COQ7  -     chr16:19079239-19091417 +  16p12.3   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)COQ7  -     16p12.3   [Description]    (hg38-Dec_2013)
EnsemblCOQ7 - 16p12.3 [CytoView hg19]  COQ7 - 16p12.3 [CytoView hg38]
Mapping of homologs : NCBICOQ7 [Mapview hg19]  COQ7 [Mapview hg38]
OMIM601683   
Gene and transcription
Genbank (Entrez)AF032900 AF098948 AF374413 AI279093 AI424412
RefSeq transcript (Entrez)NM_001190983 NM_016138
RefSeq genomic (Entrez)NC_000016 NC_018927 NT_187260 NW_004929400
Consensus coding sequences : CCDS (NCBI)COQ7
Cluster EST : UnigeneHs.157113 [ NCBI ]
CGAP (NCI)Hs.157113
Alternative Splicing GalleryENSG00000167186
Gene ExpressionCOQ7 [ NCBI-GEO ]   COQ7 [ EBI - ARRAY_EXPRESS ]   COQ7 [ SEEK ]   COQ7 [ MEM ]
Gene Expression Viewer (FireBrowse)COQ7 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)10229
GTEX Portal (Tissue expression)COQ7
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ99807   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ99807  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ99807
Splice isoforms : SwissVarQ99807
PhosPhoSitePlusQ99807
Domains : Interpro (EBI)Ferritin-like_SF    Ferritin-rel    Ubq_synth_Coq7   
Domain families : Pfam (Sanger)COQ7 (PF03232)   
Domain families : Pfam (NCBI)pfam03232   
Conserved Domain (NCBI)COQ7
DMDM Disease mutations10229
Blocks (Seattle)COQ7
SuperfamilyQ99807
Human Protein AtlasENSG00000167186
Peptide AtlasQ99807
HPRD03401
IPIIPI00294073   IPI00645720   
Protein Interaction databases
DIP (DOE-UCLA)Q99807
IntAct (EBI)Q99807
FunCoupENSG00000167186
BioGRIDCOQ7
STRING (EMBL)COQ7
ZODIACCOQ7
Ontologies - Pathways
QuickGOQ99807
Ontology : AmiGOage-dependent response to oxidative stress  in utero embryonic development  neural tube formation  monooxygenase activity  protein binding  nucleus  mitochondrial inner membrane  ubiquinone biosynthetic process  ubiquinone biosynthetic process  ubiquinone biosynthetic process  determination of adult lifespan  oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, NAD(P)H as one donor, and incorporation of one atom of oxygen  neurogenesis  extrinsic component of mitochondrial inner membrane  cellular response to oxidative stress  mitochondrial ATP synthesis coupled electron transport  small molecule metabolic process  metal ion binding  mitochondrion morphogenesis  
Ontology : EGO-EBIage-dependent response to oxidative stress  in utero embryonic development  neural tube formation  monooxygenase activity  protein binding  nucleus  mitochondrial inner membrane  ubiquinone biosynthetic process  ubiquinone biosynthetic process  ubiquinone biosynthetic process  determination of adult lifespan  oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, NAD(P)H as one donor, and incorporation of one atom of oxygen  neurogenesis  extrinsic component of mitochondrial inner membrane  cellular response to oxidative stress  mitochondrial ATP synthesis coupled electron transport  small molecule metabolic process  metal ion binding  mitochondrion morphogenesis  
Pathways : KEGGUbiquinone and other terpenoid-quinone biosynthesis   
NDEx NetworkCOQ7
Atlas of Cancer Signalling NetworkCOQ7
Wikipedia pathwaysCOQ7
Orthology - Evolution
OrthoDB10229
GeneTree (enSembl)ENSG00000167186
Phylogenetic Trees/Animal Genes : TreeFamCOQ7
HOVERGENQ99807
HOGENOMQ99807
Homologs : HomoloGeneCOQ7
Homology/Alignments : Family Browser (UCSC)COQ7
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerCOQ7 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)COQ7
dbVarCOQ7
ClinVarCOQ7
1000_GenomesCOQ7 
Exome Variant ServerCOQ7
ExAC (Exome Aggregation Consortium)COQ7 (select the gene name)
Genetic variants : HAPMAP10229
Genomic Variants (DGV)COQ7 [DGVbeta]
DECIPHER (Syndromes)16:19079239-19091417  ENSG00000167186
CONAN: Copy Number AnalysisCOQ7 
Mutations
ICGC Data PortalCOQ7 
TCGA Data PortalCOQ7 
Broad Tumor PortalCOQ7
OASIS PortalCOQ7 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICCOQ7  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDCOQ7
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
LOVD (Leiden Open Variation Database)MSeqDR-LSDB Mitochondrial Disease Locus Specific Database
BioMutasearch COQ7
DgiDB (Drug Gene Interaction Database)COQ7
DoCM (Curated mutations)COQ7 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)COQ7 (select a term)
intoGenCOQ7
Cancer3DCOQ7(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM601683   
Orphanet
MedgenCOQ7
Genetic Testing Registry COQ7
NextProtQ99807 [Medical]
TSGene10229
GENETestsCOQ7
Huge Navigator COQ7 [HugePedia]
snp3D : Map Gene to Disease10229
BioCentury BCIQCOQ7
ClinGenCOQ7
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD10229
Chemical/Pharm GKB GenePA26761
Clinical trialCOQ7
Miscellaneous
canSAR (ICR)COQ7 (select the gene name)
Probes
Litterature
PubMed22 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineCOQ7
EVEXCOQ7
GoPubMedCOQ7
iHOPCOQ7
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Mar 14 12:00:07 CET 2017

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