Atlas of Genetics and Cytogenetics in Oncology and Haematology


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COQ8A (coenzyme Q8A)

Identity

Other aliasADCK3
ARCA2
CABC1
COQ10D4
COQ8
SCAR9
HGNC (Hugo) COQ8A
LocusID (NCBI) 56997
Atlas_Id 78611
Location 1q42.13  [Link to chromosome band 1q42]
Location_base_pair Starts at 226940237 and ends at 226987545 bp from pter ( according to hg38-Dec_2013)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)COQ8A   16812
Cards
Entrez_Gene (NCBI)COQ8A  56997  coenzyme Q8A
AliasesADCK3; ARCA2; CABC1; COQ10D4; 
COQ8; SCAR9
GeneCards (Weizmann)COQ8A
Ensembl hg19 (Hinxton) [Gene_View]
Ensembl hg38 (Hinxton) [Gene_View]  chr1:226940237-226987545 [Contig_View]  COQ8A [Vega]
TCGA cBioPortalCOQ8A
AceView (NCBI)COQ8A
Genatlas (Paris)COQ8A
WikiGenes56997
SOURCE (Princeton)COQ8A
Genetics Home Reference (NIH)COQ8A
Genomic and cartography
GoldenPath hg38 (UCSC)COQ8A  -     chr1:226940237-226987545 +  1q42.13   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)COQ8A  -     1q42.13   [Description]    (hg19-Feb_2009)
EnsemblCOQ8A - 1q42.13 [CytoView hg19]  COQ8A - 1q42.13 [CytoView hg38]
Mapping of homologs : NCBICOQ8A [Mapview hg19]  COQ8A [Mapview hg38]
OMIM606980   612016   
Gene and transcription
Genbank (Entrez)AB073905 AF218003 AI888739 AJ278126 AK074693
RefSeq transcript (Entrez)NM_020247
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)COQ8A
Cluster EST : UnigeneHs.118241 [ NCBI ]
CGAP (NCI)Hs.118241
Gene ExpressionCOQ8A [ NCBI-GEO ]   COQ8A [ EBI - ARRAY_EXPRESS ]   COQ8A [ SEEK ]   COQ8A [ MEM ]
Gene Expression Viewer (FireBrowse)COQ8A [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)56997
GTEX Portal (Tissue expression)COQ8A
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ8NI60   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ8NI60  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ8NI60
Splice isoforms : SwissVarQ8NI60
PhosPhoSitePlusQ8NI60
Domains : Interpro (EBI)Kinase-like_dom    UbiB_dom   
Domain families : Pfam (Sanger)ABC1 (PF03109)   
Domain families : Pfam (NCBI)pfam03109   
Conserved Domain (NCBI)COQ8A
DMDM Disease mutations56997
Blocks (Seattle)COQ8A
PDB (SRS)4PED    5I35   
PDB (PDBSum)4PED    5I35   
PDB (IMB)4PED    5I35   
PDB (RSDB)4PED    5I35   
Structural Biology KnowledgeBase4PED    5I35   
SCOP (Structural Classification of Proteins)4PED    5I35   
CATH (Classification of proteins structures)4PED    5I35   
SuperfamilyQ8NI60
Peptide AtlasQ8NI60
HPRD07375
IPIIPI00176469   IPI00641178   IPI00645029   IPI00909384   IPI00909535   IPI01011466   IPI00644715   
Protein Interaction databases
DIP (DOE-UCLA)Q8NI60
IntAct (EBI)Q8NI60
BioGRIDCOQ8A
STRING (EMBL)COQ8A
ZODIACCOQ8A
Ontologies - Pathways
QuickGOQ8NI60
Ontology : AmiGOprotein kinase activity  protein binding  ATP binding  mitochondrion  protein phosphorylation  ubiquinone biosynthetic process  ubiquinone biosynthetic process  integral component of membrane  kinase activity  phosphorylation  ADP binding  
Ontology : EGO-EBIprotein kinase activity  protein binding  ATP binding  mitochondrion  protein phosphorylation  ubiquinone biosynthetic process  ubiquinone biosynthetic process  integral component of membrane  kinase activity  phosphorylation  ADP binding  
NDEx NetworkCOQ8A
Atlas of Cancer Signalling NetworkCOQ8A
Wikipedia pathwaysCOQ8A
Orthology - Evolution
OrthoDB56997
Phylogenetic Trees/Animal Genes : TreeFamCOQ8A
HOVERGENQ8NI60
HOGENOMQ8NI60
Homologs : HomoloGeneCOQ8A
Homology/Alignments : Family Browser (UCSC)COQ8A
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerCOQ8A [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)COQ8A
dbVarCOQ8A
ClinVarCOQ8A
1000_GenomesCOQ8A 
Exome Variant ServerCOQ8A
ExAC (Exome Aggregation Consortium)COQ8A (select the gene name)
Genetic variants : HAPMAP56997
Genomic Variants (DGV)COQ8A [DGVbeta]
DECIPHERCOQ8A [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisCOQ8A 
Mutations
ICGC Data PortalCOQ8A 
TCGA Data PortalCOQ8A 
Broad Tumor PortalCOQ8A
OASIS PortalCOQ8A [ Somatic mutations - Copy number]
Mutations and Diseases : HGMDCOQ8A
BioMutasearch COQ8A
DgiDB (Drug Gene Interaction Database)COQ8A
DoCM (Curated mutations)COQ8A (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)COQ8A (select a term)
intoGenCOQ8A
Cancer3DCOQ8A(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM606980    612016   
Orphanet
MedgenCOQ8A
Genetic Testing Registry COQ8A
NextProtQ8NI60 [Medical]
TSGene56997
GENETestsCOQ8A
Target ValidationCOQ8A
Huge Navigator COQ8A [HugePedia]
snp3D : Map Gene to Disease56997
BioCentury BCIQCOQ8A
ClinGenCOQ8A
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD56997
Chemical/Pharm GKB GenePA25999
Clinical trialCOQ8A
Miscellaneous
canSAR (ICR)COQ8A (select the gene name)
Probes
Litterature
PubMed28 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineCOQ8A
EVEXCOQ8A
GoPubMedCOQ8A
iHOPCOQ8A
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Sep 18 13:05:15 CEST 2017

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