Atlas of Genetics and Cytogenetics in Oncology and Haematology


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COQ9 (coenzyme Q9)

Identity

Alias_namesC16orf49
chromosome 16 open reading frame 49
coenzyme Q9 homolog (yeast)
coenzyme Q9 homolog (S. cerevisiae)
Alias_symbol (synonym)DKFZP434K046
Other aliasCOQ10D5
HGNC (Hugo) COQ9
LocusID (NCBI) 57017
Atlas_Id 62030
Location 16q21  [Link to chromosome band 16q21]
Location_base_pair Starts at 57447425 and ends at 57461275 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
COQ9 (16q21) / PLEKHG1 (6q25.1)EXOSC2 (9q34.12) / COQ9 (16q21)P2RX7 (12q24.31) / COQ9 (16q21)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)COQ9   25302
Cards
Entrez_Gene (NCBI)COQ9  57017  coenzyme Q9
AliasesC16orf49; COQ10D5
GeneCards (Weizmann)COQ9
Ensembl hg19 (Hinxton)ENSG00000088682 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000088682 [Gene_View]  chr16:57447425-57461275 [Contig_View]  COQ9 [Vega]
ICGC DataPortalENSG00000088682
TCGA cBioPortalCOQ9
AceView (NCBI)COQ9
Genatlas (Paris)COQ9
WikiGenes57017
SOURCE (Princeton)COQ9
Genetics Home Reference (NIH)COQ9
Genomic and cartography
GoldenPath hg38 (UCSC)COQ9  -     chr16:57447425-57461275 +  16q21   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)COQ9  -     16q21   [Description]    (hg19-Feb_2009)
EnsemblCOQ9 - 16q21 [CytoView hg19]  COQ9 - 16q21 [CytoView hg38]
Mapping of homologs : NCBICOQ9 [Mapview hg19]  COQ9 [Mapview hg38]
OMIM612837   614654   
Gene and transcription
Genbank (Entrez)AF161444 AK075438 AK290627 AK293585 AK295793
RefSeq transcript (Entrez)NM_020312
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)COQ9
Cluster EST : UnigeneHs.513632 [ NCBI ]
CGAP (NCI)Hs.513632
Alternative Splicing GalleryENSG00000088682
Gene ExpressionCOQ9 [ NCBI-GEO ]   COQ9 [ EBI - ARRAY_EXPRESS ]   COQ9 [ SEEK ]   COQ9 [ MEM ]
Gene Expression Viewer (FireBrowse)COQ9 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)57017
GTEX Portal (Tissue expression)COQ9
Human Protein AtlasENSG00000088682-COQ9 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtO75208   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtO75208  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProO75208
Splice isoforms : SwissVarO75208
PhosPhoSitePlusO75208
Domains : Interpro (EBI)COQ9    Ubiq_biosynth_COQ9   
Domain families : Pfam (Sanger)COQ9 (PF08511)   
Domain families : Pfam (NCBI)pfam08511   
Conserved Domain (NCBI)COQ9
DMDM Disease mutations57017
Blocks (Seattle)COQ9
PDB (SRS)4RHP   
PDB (PDBSum)4RHP   
PDB (IMB)4RHP   
PDB (RSDB)4RHP   
Structural Biology KnowledgeBase4RHP   
SCOP (Structural Classification of Proteins)4RHP   
CATH (Classification of proteins structures)4RHP   
SuperfamilyO75208
Human Protein Atlas [tissue]ENSG00000088682-COQ9 [tissue]
Peptide AtlasO75208
HPRD13157
IPIIPI00470631   IPI00385901   IPI00908298   
Protein Interaction databases
DIP (DOE-UCLA)O75208
IntAct (EBI)O75208
FunCoupENSG00000088682
BioGRIDCOQ9
STRING (EMBL)COQ9
ZODIACCOQ9
Ontologies - Pathways
QuickGOO75208
Ontology : AmiGOprotein binding  mitochondrion  mitochondrial inner membrane  mitochondrial electron transport, NADH to ubiquinone  ubiquinone biosynthetic process  ubiquinone biosynthetic process  ubiquinone biosynthetic process  lipid binding  protein homodimerization activity  
Ontology : EGO-EBIprotein binding  mitochondrion  mitochondrial inner membrane  mitochondrial electron transport, NADH to ubiquinone  ubiquinone biosynthetic process  ubiquinone biosynthetic process  ubiquinone biosynthetic process  lipid binding  protein homodimerization activity  
NDEx NetworkCOQ9
Atlas of Cancer Signalling NetworkCOQ9
Wikipedia pathwaysCOQ9
Orthology - Evolution
OrthoDB57017
GeneTree (enSembl)ENSG00000088682
Phylogenetic Trees/Animal Genes : TreeFamCOQ9
HOVERGENO75208
HOGENOMO75208
Homologs : HomoloGeneCOQ9
Homology/Alignments : Family Browser (UCSC)COQ9
Gene fusions - Rearrangements
Tumor Fusion PortalCOQ9
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerCOQ9 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)COQ9
dbVarCOQ9
ClinVarCOQ9
1000_GenomesCOQ9 
Exome Variant ServerCOQ9
ExAC (Exome Aggregation Consortium)ENSG00000088682
GNOMAD BrowserENSG00000088682
Genetic variants : HAPMAP57017
Genomic Variants (DGV)COQ9 [DGVbeta]
DECIPHERCOQ9 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisCOQ9 
Mutations
ICGC Data PortalCOQ9 
TCGA Data PortalCOQ9 
Broad Tumor PortalCOQ9
OASIS PortalCOQ9 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICCOQ9  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDCOQ9
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
LOVD (Leiden Open Variation Database)MSeqDR-LSDB Mitochondrial Disease Locus Specific Database
BioMutasearch COQ9
DgiDB (Drug Gene Interaction Database)COQ9
DoCM (Curated mutations)COQ9 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)COQ9 (select a term)
intoGenCOQ9
Cancer3DCOQ9(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM612837    614654   
Orphanet21692   
DisGeNETCOQ9
MedgenCOQ9
Genetic Testing Registry COQ9
NextProtO75208 [Medical]
TSGene57017
GENETestsCOQ9
Target ValidationCOQ9
Huge Navigator COQ9 [HugePedia]
snp3D : Map Gene to Disease57017
BioCentury BCIQCOQ9
ClinGenCOQ9
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD57017
Chemical/Pharm GKB GenePA142672085
Clinical trialCOQ9
Miscellaneous
canSAR (ICR)COQ9 (select the gene name)
Probes
Litterature
PubMed18 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineCOQ9
EVEXCOQ9
GoPubMedCOQ9
iHOPCOQ9
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Tue Nov 21 13:33:05 CET 2017

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