Atlas of Genetics and Cytogenetics in Oncology and Haematology


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CORO1A (coronin 1A)

Identity

Alias_namescoronin
Alias_symbol (synonym)HCORO1
p57
coronin-1
Other aliasCLABP
CLIPINA
IMD8
TACO
HGNC (Hugo) CORO1A
LocusID (NCBI) 11151
Atlas_Id 52535
Location 16p11.2  [Link to chromosome band 16p11]
Location_base_pair Starts at 30194731 and ends at 30200397 bp from pter ( according to hg19-Feb_2009)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)CORO1A   2252
LRG (Locus Reference Genomic)LRG_195
Cards
Entrez_Gene (NCBI)CORO1A  11151  coronin 1A
AliasesCLABP; CLIPINA; HCORO1; IMD8; 
TACO; p57
GeneCards (Weizmann)CORO1A
Ensembl hg19 (Hinxton)ENSG00000102879 [Gene_View]  chr16:30194731-30200397 [Contig_View]  CORO1A [Vega]
Ensembl hg38 (Hinxton)ENSG00000102879 [Gene_View]  chr16:30194731-30200397 [Contig_View]  CORO1A [Vega]
ICGC DataPortalENSG00000102879
TCGA cBioPortalCORO1A
AceView (NCBI)CORO1A
Genatlas (Paris)CORO1A
WikiGenes11151
SOURCE (Princeton)CORO1A
Genetics Home Reference (NIH)CORO1A
Genomic and cartography
GoldenPath hg19 (UCSC)CORO1A  -     chr16:30194731-30200397 +  16p11.2   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)CORO1A  -     16p11.2   [Description]    (hg38-Dec_2013)
EnsemblCORO1A - 16p11.2 [CytoView hg19]  CORO1A - 16p11.2 [CytoView hg38]
Mapping of homologs : NCBICORO1A [Mapview hg19]  CORO1A [Mapview hg38]
OMIM605000   615401   
Gene and transcription
Genbank (Entrez)AB209221 AF495470 AK096332 AK097964 AK123401
RefSeq transcript (Entrez)NM_001193333 NM_007074
RefSeq genomic (Entrez)NC_000016 NC_018927 NG_023415 NT_187260 NW_004929400
Consensus coding sequences : CCDS (NCBI)CORO1A
Cluster EST : UnigeneHs.415067 [ NCBI ]
CGAP (NCI)Hs.415067
Alternative Splicing GalleryENSG00000102879
Gene ExpressionCORO1A [ NCBI-GEO ]   CORO1A [ EBI - ARRAY_EXPRESS ]   CORO1A [ SEEK ]   CORO1A [ MEM ]
Gene Expression Viewer (FireBrowse)CORO1A [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)11151
GTEX Portal (Tissue expression)CORO1A
Protein : pattern, domain, 3D structure
UniProt/SwissProtP31146   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtP31146  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProP31146
Splice isoforms : SwissVarP31146
PhosPhoSitePlusP31146
Domaine pattern : Prosite (Expaxy)WD_REPEATS_1 (PS00678)    WD_REPEATS_2 (PS50082)    WD_REPEATS_REGION (PS50294)   
Domains : Interpro (EBI)CORO1A    Coronin    DUF1899    Trimer_CC    WD40/YVTN_repeat-like_dom    WD40_repeat    WD40_repeat_CS    WD40_repeat_dom   
Domain families : Pfam (Sanger)DUF1899 (PF08953)    Trimer_CC (PF08954)    WD40 (PF00400)   
Domain families : Pfam (NCBI)pfam08953    pfam08954    pfam00400   
Domain families : Smart (EMBL)WD40 (SM00320)  
Conserved Domain (NCBI)CORO1A
DMDM Disease mutations11151
Blocks (Seattle)CORO1A
SuperfamilyP31146
Human Protein AtlasENSG00000102879
Peptide AtlasP31146
HPRD05414
IPIIPI00010133   IPI00908906   IPI00446617   
Protein Interaction databases
DIP (DOE-UCLA)P31146
IntAct (EBI)P31146
FunCoupENSG00000102879
BioGRIDCORO1A
STRING (EMBL)CORO1A
ZODIACCORO1A
Ontologies - Pathways
QuickGOP31146
Ontology : AmiGOimmunological synapse formation  immunological synapse  phagolysosome assembly  phagocytic cup  actin binding  actin monomer binding  protein binding  nucleus  cytoplasm  early endosome  cytosol  actin filament  plasma membrane  cell-cell junction  calcium ion transport  phagocytosis  movement of cell or subcellular component  actin filament organization  protein C-terminus binding  cytoskeletal protein binding  regulation of cell shape  membrane  lamellipodium  actin cytoskeleton organization  positive regulation of cell migration  axon  leukocyte chemotaxis  phagocytic vesicle membrane  cortical actin cytoskeleton  cortical actin cytoskeleton  negative regulation of vesicle fusion  cell-substrate adhesion  myosin heavy chain binding  uropod organization  regulation of actin cytoskeleton organization  nerve growth factor signaling pathway  positive regulation of T cell proliferation  protein homodimerization activity  T cell homeostasis  protein complex  natural killer cell degranulation  negative regulation of neuron apoptotic process  phosphatidylinositol 3-kinase binding  poly(A) RNA binding  innate immune response  phagocytic vesicle  homeostasis of number of cells within a tissue  positive chemotaxis  actin filament binding  actin filament binding  negative regulation of actin nucleation  regulation of release of sequestered calcium ion into cytosol  early endosome to recycling endosome transport  extracellular exosome  cellular response to interleukin-4  
Ontology : EGO-EBIimmunological synapse formation  immunological synapse  phagolysosome assembly  phagocytic cup  actin binding  actin monomer binding  protein binding  nucleus  cytoplasm  early endosome  cytosol  actin filament  plasma membrane  cell-cell junction  calcium ion transport  phagocytosis  movement of cell or subcellular component  actin filament organization  protein C-terminus binding  cytoskeletal protein binding  regulation of cell shape  membrane  lamellipodium  actin cytoskeleton organization  positive regulation of cell migration  axon  leukocyte chemotaxis  phagocytic vesicle membrane  cortical actin cytoskeleton  cortical actin cytoskeleton  negative regulation of vesicle fusion  cell-substrate adhesion  myosin heavy chain binding  uropod organization  regulation of actin cytoskeleton organization  nerve growth factor signaling pathway  positive regulation of T cell proliferation  protein homodimerization activity  T cell homeostasis  protein complex  natural killer cell degranulation  negative regulation of neuron apoptotic process  phosphatidylinositol 3-kinase binding  poly(A) RNA binding  innate immune response  phagocytic vesicle  homeostasis of number of cells within a tissue  positive chemotaxis  actin filament binding  actin filament binding  negative regulation of actin nucleation  regulation of release of sequestered calcium ion into cytosol  early endosome to recycling endosome transport  extracellular exosome  cellular response to interleukin-4  
Pathways : KEGGPhagosome    Tuberculosis   
NDEx NetworkCORO1A
Atlas of Cancer Signalling NetworkCORO1A
Wikipedia pathwaysCORO1A
Orthology - Evolution
OrthoDB11151
GeneTree (enSembl)ENSG00000102879
Phylogenetic Trees/Animal Genes : TreeFamCORO1A
HOVERGENP31146
HOGENOMP31146
Homologs : HomoloGeneCORO1A
Homology/Alignments : Family Browser (UCSC)CORO1A
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerCORO1A [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)CORO1A
dbVarCORO1A
ClinVarCORO1A
1000_GenomesCORO1A 
Exome Variant ServerCORO1A
ExAC (Exome Aggregation Consortium)CORO1A (select the gene name)
Genetic variants : HAPMAP11151
Genomic Variants (DGV)CORO1A [DGVbeta]
DECIPHER (Syndromes)16:30194731-30200397  ENSG00000102879
CONAN: Copy Number AnalysisCORO1A 
Mutations
ICGC Data PortalCORO1A 
TCGA Data PortalCORO1A 
Broad Tumor PortalCORO1A
OASIS PortalCORO1A [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICCORO1A  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDCORO1A
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
LOVD (Leiden Open Variation Database)**PUBLIC** CCHMC Molecular Genetics Laboratory Mutation Database
BioMutasearch CORO1A
DgiDB (Drug Gene Interaction Database)CORO1A
DoCM (Curated mutations)CORO1A (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)CORO1A (select a term)
intoGenCORO1A
Cancer3DCORO1A(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM605000    615401   
Orphanet19062   
MedgenCORO1A
Genetic Testing Registry CORO1A
NextProtP31146 [Medical]
TSGene11151
GENETestsCORO1A
Huge Navigator CORO1A [HugePedia]
snp3D : Map Gene to Disease11151
BioCentury BCIQCORO1A
ClinGenCORO1A
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD11151
Chemical/Pharm GKB GenePA26768
Clinical trialCORO1A
Miscellaneous
canSAR (ICR)CORO1A (select the gene name)
Probes
Litterature
PubMed49 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineCORO1A
EVEXCORO1A
GoPubMedCORO1A
iHOPCORO1A
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

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indexed on : Tue Mar 14 13:01:22 CET 2017

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