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CORO2A (coronin 2A)

Identity

Alias_namescoronin
Alias_symbol (synonym)IR10
WDR2
Other aliasCLIPINB
HGNC (Hugo) CORO2A
LocusID (NCBI) 7464
Atlas_Id 53418
Location 9q22.33  [Link to chromosome band 9q22]
Location_base_pair Starts at 98120975 and ends at 98172892 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
CORO2A (9q22.33) / IPPK (9q22.31)MAN2C1 (15q24.2) / CORO2A (9q22.33)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)CORO2A   2255
Cards
Entrez_Gene (NCBI)CORO2A  7464  coronin 2A
AliasesCLIPINB; IR10; WDR2
GeneCards (Weizmann)CORO2A
Ensembl hg19 (Hinxton)ENSG00000106789 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000106789 [Gene_View]  chr9:98120975-98172892 [Contig_View]  CORO2A [Vega]
ICGC DataPortalENSG00000106789
TCGA cBioPortalCORO2A
AceView (NCBI)CORO2A
Genatlas (Paris)CORO2A
WikiGenes7464
SOURCE (Princeton)CORO2A
Genetics Home Reference (NIH)CORO2A
Genomic and cartography
GoldenPath hg38 (UCSC)CORO2A  -     chr9:98120975-98172892 -  9q22.33   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)CORO2A  -     9q22.33   [Description]    (hg19-Feb_2009)
EnsemblCORO2A - 9q22.33 [CytoView hg19]  CORO2A - 9q22.33 [CytoView hg38]
Mapping of homologs : NCBICORO2A [Mapview hg19]  CORO2A [Mapview hg38]
OMIM602159   
Gene and transcription
Genbank (Entrez)AB209809 AK292788 BC000010 BC011690 BM822208
RefSeq transcript (Entrez)NM_003389 NM_052820
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)CORO2A
Cluster EST : UnigeneHs.113094 [ NCBI ]
CGAP (NCI)Hs.113094
Alternative Splicing GalleryENSG00000106789
Gene ExpressionCORO2A [ NCBI-GEO ]   CORO2A [ EBI - ARRAY_EXPRESS ]   CORO2A [ SEEK ]   CORO2A [ MEM ]
Gene Expression Viewer (FireBrowse)CORO2A [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)7464
GTEX Portal (Tissue expression)CORO2A
Human Protein AtlasENSG00000106789-CORO2A [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ92828   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ92828  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ92828
Splice isoforms : SwissVarQ92828
PhosPhoSitePlusQ92828
Domaine pattern : Prosite (Expaxy)WD_REPEATS_1 (PS00678)    WD_REPEATS_2 (PS50082)    WD_REPEATS_REGION (PS50294)   
Domains : Interpro (EBI)CORO2A    Coronin    DUF1899    WD40/YVTN_repeat-like_dom    WD40_repeat    WD40_repeat_CS    WD40_repeat_dom   
Domain families : Pfam (Sanger)DUF1899 (PF08953)    WD40 (PF00400)   
Domain families : Pfam (NCBI)pfam08953    pfam00400   
Domain families : Smart (EMBL)DUF1899 (SM01166)  WD40 (SM00320)  
Conserved Domain (NCBI)CORO2A
DMDM Disease mutations7464
Blocks (Seattle)CORO2A
SuperfamilyQ92828
Human Protein Atlas [tissue]ENSG00000106789-CORO2A [tissue]
Peptide AtlasQ92828
HPRD03695
IPIIPI00023736   IPI00556648   
Protein Interaction databases
DIP (DOE-UCLA)Q92828
IntAct (EBI)Q92828
FunCoupENSG00000106789
BioGRIDCORO2A
STRING (EMBL)CORO2A
ZODIACCORO2A
Ontologies - Pathways
QuickGOQ92828
Ontology : AmiGOactin cytoskeleton  transcriptional repressor complex  actin cytoskeleton organization  intracellular signal transduction  actin filament binding  
Ontology : EGO-EBIactin cytoskeleton  transcriptional repressor complex  actin cytoskeleton organization  intracellular signal transduction  actin filament binding  
NDEx NetworkCORO2A
Atlas of Cancer Signalling NetworkCORO2A
Wikipedia pathwaysCORO2A
Orthology - Evolution
OrthoDB7464
GeneTree (enSembl)ENSG00000106789
Phylogenetic Trees/Animal Genes : TreeFamCORO2A
HOVERGENQ92828
HOGENOMQ92828
Homologs : HomoloGeneCORO2A
Homology/Alignments : Family Browser (UCSC)CORO2A
Gene fusions - Rearrangements
Tumor Fusion PortalCORO2A
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerCORO2A [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)CORO2A
dbVarCORO2A
ClinVarCORO2A
1000_GenomesCORO2A 
Exome Variant ServerCORO2A
ExAC (Exome Aggregation Consortium)ENSG00000106789
GNOMAD BrowserENSG00000106789
Genetic variants : HAPMAP7464
Genomic Variants (DGV)CORO2A [DGVbeta]
DECIPHERCORO2A [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisCORO2A 
Mutations
ICGC Data PortalCORO2A 
TCGA Data PortalCORO2A 
Broad Tumor PortalCORO2A
OASIS PortalCORO2A [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICCORO2A  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDCORO2A
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch CORO2A
DgiDB (Drug Gene Interaction Database)CORO2A
DoCM (Curated mutations)CORO2A (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)CORO2A (select a term)
intoGenCORO2A
Cancer3DCORO2A(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM602159   
Orphanet
DisGeNETCORO2A
MedgenCORO2A
Genetic Testing Registry CORO2A
NextProtQ92828 [Medical]
TSGene7464
GENETestsCORO2A
Target ValidationCORO2A
Huge Navigator CORO2A [HugePedia]
snp3D : Map Gene to Disease7464
BioCentury BCIQCORO2A
ClinGenCORO2A
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD7464
Chemical/Pharm GKB GenePA26771
Clinical trialCORO2A
Miscellaneous
canSAR (ICR)CORO2A (select the gene name)
Probes
Litterature
PubMed16 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineCORO2A
EVEXCORO2A
GoPubMedCORO2A
iHOPCORO2A
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Nov 21 14:08:40 CET 2017

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