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CORO2B (coronin 2B)

Identity

Alias_namescoronin, actin-binding protein, 2B
Alias_symbol (synonym)ClipinC
KIAA0925
Other aliasCLIPINC
HGNC (Hugo) CORO2B
LocusID (NCBI) 10391
Atlas_Id 62032
Location 15q23  [Link to chromosome band 15q23]
Location_base_pair Starts at 68616540 and ends at 68727805 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
CA8 (8q12.1) / CORO2B (15q23)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)CORO2B   2256
Cards
Entrez_Gene (NCBI)CORO2B  10391  coronin 2B
AliasesCLIPINC
GeneCards (Weizmann)CORO2B
Ensembl hg19 (Hinxton)ENSG00000103647 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000103647 [Gene_View]  chr15:68616540-68727805 [Contig_View]  CORO2B [Vega]
ICGC DataPortalENSG00000103647
TCGA cBioPortalCORO2B
AceView (NCBI)CORO2B
Genatlas (Paris)CORO2B
WikiGenes10391
SOURCE (Princeton)CORO2B
Genetics Home Reference (NIH)CORO2B
Genomic and cartography
GoldenPath hg38 (UCSC)CORO2B  -     chr15:68616540-68727805 +  15q23   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)CORO2B  -     15q23   [Description]    (hg19-Feb_2009)
EnsemblCORO2B - 15q23 [CytoView hg19]  CORO2B - 15q23 [CytoView hg38]
Mapping of homologs : NCBICORO2B [Mapview hg19]  CORO2B [Mapview hg38]
OMIM605002   
Gene and transcription
Genbank (Entrez)AB010098 AB023142 AI871484 AK124711 AK289678
RefSeq transcript (Entrez)NM_001190456 NM_001190457 NM_001324014 NM_001324015 NM_006091
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)CORO2B
Cluster EST : UnigeneHs.551213 [ NCBI ]
CGAP (NCI)Hs.551213
Alternative Splicing GalleryENSG00000103647
Gene ExpressionCORO2B [ NCBI-GEO ]   CORO2B [ EBI - ARRAY_EXPRESS ]   CORO2B [ SEEK ]   CORO2B [ MEM ]
Gene Expression Viewer (FireBrowse)CORO2B [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)10391
GTEX Portal (Tissue expression)CORO2B
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9UQ03   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9UQ03  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9UQ03
Splice isoforms : SwissVarQ9UQ03
PhosPhoSitePlusQ9UQ03
Domaine pattern : Prosite (Expaxy)WD_REPEATS_1 (PS00678)    WD_REPEATS_2 (PS50082)    WD_REPEATS_REGION (PS50294)   
Domains : Interpro (EBI)CORO2B    Coronin    DUF1899    WD40/YVTN_repeat-like_dom    WD40_repeat    WD40_repeat_CS    WD40_repeat_dom   
Domain families : Pfam (Sanger)DUF1899 (PF08953)    WD40 (PF00400)   
Domain families : Pfam (NCBI)pfam08953    pfam00400   
Domain families : Smart (EMBL)DUF1899 (SM01166)  WD40 (SM00320)  
Conserved Domain (NCBI)CORO2B
DMDM Disease mutations10391
Blocks (Seattle)CORO2B
SuperfamilyQ9UQ03
Human Protein AtlasENSG00000103647
Peptide AtlasQ9UQ03
HPRD05416
IPIIPI00298912   IPI00940363   
Protein Interaction databases
DIP (DOE-UCLA)Q9UQ03
IntAct (EBI)Q9UQ03
FunCoupENSG00000103647
BioGRIDCORO2B
STRING (EMBL)CORO2B
ZODIACCORO2B
Ontologies - Pathways
QuickGOQ9UQ03
Ontology : AmiGOactin binding  protein binding  cytoplasm  actin cytoskeleton  actin cytoskeleton  membrane  actin cytoskeleton organization  actin cytoskeleton organization  actin filament binding  
Ontology : EGO-EBIactin binding  protein binding  cytoplasm  actin cytoskeleton  actin cytoskeleton  membrane  actin cytoskeleton organization  actin cytoskeleton organization  actin filament binding  
NDEx NetworkCORO2B
Atlas of Cancer Signalling NetworkCORO2B
Wikipedia pathwaysCORO2B
Orthology - Evolution
OrthoDB10391
GeneTree (enSembl)ENSG00000103647
Phylogenetic Trees/Animal Genes : TreeFamCORO2B
HOVERGENQ9UQ03
HOGENOMQ9UQ03
Homologs : HomoloGeneCORO2B
Homology/Alignments : Family Browser (UCSC)CORO2B
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerCORO2B [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)CORO2B
dbVarCORO2B
ClinVarCORO2B
1000_GenomesCORO2B 
Exome Variant ServerCORO2B
ExAC (Exome Aggregation Consortium)CORO2B (select the gene name)
Genetic variants : HAPMAP10391
Genomic Variants (DGV)CORO2B [DGVbeta]
DECIPHERCORO2B [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisCORO2B 
Mutations
ICGC Data PortalCORO2B 
TCGA Data PortalCORO2B 
Broad Tumor PortalCORO2B
OASIS PortalCORO2B [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICCORO2B  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDCORO2B
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch CORO2B
DgiDB (Drug Gene Interaction Database)CORO2B
DoCM (Curated mutations)CORO2B (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)CORO2B (select a term)
intoGenCORO2B
Cancer3DCORO2B(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM605002   
Orphanet
MedgenCORO2B
Genetic Testing Registry CORO2B
NextProtQ9UQ03 [Medical]
TSGene10391
GENETestsCORO2B
Target ValidationCORO2B
Huge Navigator CORO2B [HugePedia]
snp3D : Map Gene to Disease10391
BioCentury BCIQCORO2B
ClinGenCORO2B
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD10391
Chemical/Pharm GKB GenePA26772
Clinical trialCORO2B
Miscellaneous
canSAR (ICR)CORO2B (select the gene name)
Probes
Litterature
PubMed9 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineCORO2B
EVEXCORO2B
GoPubMedCORO2B
iHOPCORO2B
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Sep 18 13:05:15 CEST 2017

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