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CORO6 (coronin 6)

Identity

Alias (NCBI)-
HGNC (Hugo) CORO6
HGNC Alias symbFLJ14871
LocusID (NCBI) 84940
Atlas_Id 62033
Location 17q11.2  [Link to chromosome band 17q11]
Location_base_pair Starts at 29614756 and ends at 29621423 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
CORO6 (17q11.2) / CORO6 (17q11.2)CORO6 (17q11.2) / SLC20A2 (8p11.21)CTC1 (17p13.1) / CORO6 (17q11.2)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 



External links

 

Nomenclature
HGNC (Hugo)CORO6   21356
Cards
Entrez_Gene (NCBI)CORO6    coronin 6
Aliases
GeneCards (Weizmann)CORO6
Ensembl hg19 (Hinxton)ENSG00000167549 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000167549 [Gene_View]  ENSG00000167549 [Sequence]  chr17:29614756-29621423 [Contig_View]  CORO6 [Vega]
ICGC DataPortalENSG00000167549
TCGA cBioPortalCORO6
AceView (NCBI)CORO6
Genatlas (Paris)CORO6
SOURCE (Princeton)CORO6
Genetics Home Reference (NIH)CORO6
Genomic and cartography
GoldenPath hg38 (UCSC)CORO6  -     chr17:29614756-29621423 -  17q11.2   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)CORO6  -     17q11.2   [Description]    (hg19-Feb_2009)
GoldenPathCORO6 - 17q11.2 [CytoView hg19]  CORO6 - 17q11.2 [CytoView hg38]
ImmunoBaseENSG00000167549
Genome Data Viewer NCBICORO6 [Mapview hg19]  
Gene and transcription
Genbank (Entrez)AF193039 AF447884 AF447885 AK027777 AK092430
RefSeq transcript (Entrez)NM_001351301 NM_001351302 NM_001388431 NM_001388433 NM_001388434 NM_001388435 NM_001388436 NM_001388437 NM_001388438 NM_032854
Consensus coding sequences : CCDS (NCBI)CORO6
Gene ExpressionCORO6 [ NCBI-GEO ]   CORO6 [ EBI - ARRAY_EXPRESS ]   CORO6 [ SEEK ]   CORO6 [ MEM ]
Gene Expression Viewer (FireBrowse)CORO6 [ Firebrowse - Broad ]
GenevisibleExpression of CORO6 in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)84940
GTEX Portal (Tissue expression)CORO6
Human Protein AtlasENSG00000167549-CORO6 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ6QEF8   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ6QEF8  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ6QEF8
PhosPhoSitePlusQ6QEF8
Domaine pattern : Prosite (Expaxy)WD_REPEATS_1 (PS00678)    WD_REPEATS_2 (PS50082)    WD_REPEATS_REGION (PS50294)   
Domains : Interpro (EBI)Apc4_WD40_dom    CORO6    Coronin    DUF1899    WD40/YVTN_repeat-like_dom_sf    WD40_repeat    WD40_repeat_CS    WD40_repeat_dom    WD40_repeat_dom_sf   
Domain families : Pfam (Sanger)ANAPC4_WD40 (PF12894)    DUF1899 (PF08953)    WD40 (PF00400)   
Domain families : Pfam (NCBI)pfam12894    pfam08953    pfam00400   
Domain families : Smart (EMBL)DUF1899 (SM01166)  WD40 (SM00320)  
Conserved Domain (NCBI)CORO6
SuperfamilyQ6QEF8
AlphaFold pdb e-kbQ6QEF8   
Human Protein Atlas [tissue]ENSG00000167549-CORO6 [tissue]
HPRD08607
Protein Interaction databases
DIP (DOE-UCLA)Q6QEF8
IntAct (EBI)Q6QEF8
BioGRIDCORO6
STRING (EMBL)CORO6
ZODIACCORO6
Ontologies - Pathways
QuickGOQ6QEF8
Ontology : AmiGOprotein binding  actin filament organization  cell migration  actin filament binding  
Ontology : EGO-EBIprotein binding  actin filament organization  cell migration  actin filament binding  
NDEx NetworkCORO6
Atlas of Cancer Signalling NetworkCORO6
Wikipedia pathwaysCORO6
Orthology - Evolution
OrthoDB84940
GeneTree (enSembl)ENSG00000167549
Phylogenetic Trees/Animal Genes : TreeFamCORO6
Homologs : HomoloGeneCORO6
Homology/Alignments : Family Browser (UCSC)CORO6
Gene fusions - Rearrangements
Fusion : QuiverCORO6
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerCORO6 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)CORO6
dbVarCORO6
ClinVarCORO6
MonarchCORO6
1000_GenomesCORO6 
Exome Variant ServerCORO6
GNOMAD BrowserENSG00000167549
Varsome BrowserCORO6
ACMGCORO6 variants
VarityQ6QEF8
Genomic Variants (DGV)CORO6 [DGVbeta]
DECIPHERCORO6 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisCORO6 
Mutations
ICGC Data PortalCORO6 
TCGA Data PortalCORO6 
Broad Tumor PortalCORO6
OASIS PortalCORO6 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICCORO6  [overview]  [genome browser]  [tissue]  [distribution]  
Somatic Mutations in Cancer : COSMIC3DCORO6
Mutations and Diseases : HGMDCORO6
LOVD (Leiden Open Variation Database)[gene] [transcripts] [variants]
BioMutaCORO6
DgiDB (Drug Gene Interaction Database)CORO6
DoCM (Curated mutations)CORO6
CIViC (Clinical Interpretations of Variants in Cancer)CORO6
Cancer3DCORO6
Impact of mutations[PolyPhen2] [Provean] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
DisGeNETCORO6
MedgenCORO6
Genetic Testing Registry CORO6
NextProtQ6QEF8 [Medical]
GENETestsCORO6
Target ValidationCORO6
Huge Navigator CORO6 [HugePedia]
ClinGenCORO6
Clinical trials, drugs, therapy
MyCancerGenomeCORO6
Protein Interactions : CTDCORO6
Pharm GKB GenePA134869901
PharosQ6QEF8
Clinical trialCORO6
Miscellaneous
canSAR (ICR)CORO6
HarmonizomeCORO6
DataMed IndexCORO6
Probes
Litterature
PubMed16 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
EVEXCORO6
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

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indexed on : Mon Oct 4 15:46:40 CEST 2021

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