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CORO6 (coronin 6)

Identity

Alias_symbol (synonym)FLJ14871
Other alias-
HGNC (Hugo) CORO6
LocusID (NCBI) 84940
Atlas_Id 62033
Location 17q11.2  [Link to chromosome band 17q11]
Location_base_pair Starts at 29614756 and ends at 29621423 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
CORO6 (17q11.2) / CORO6 (17q11.2)CORO6 (17q11.2) / SLC20A2 (8p11.21)CTC1 (17p13.1) / CORO6 (17q11.2)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)CORO6   21356
Cards
Entrez_Gene (NCBI)CORO6  84940  coronin 6
Aliases
GeneCards (Weizmann)CORO6
Ensembl hg19 (Hinxton)ENSG00000167549 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000167549 [Gene_View]  chr17:29614756-29621423 [Contig_View]  CORO6 [Vega]
ICGC DataPortalENSG00000167549
TCGA cBioPortalCORO6
AceView (NCBI)CORO6
Genatlas (Paris)CORO6
WikiGenes84940
SOURCE (Princeton)CORO6
Genetics Home Reference (NIH)CORO6
Genomic and cartography
GoldenPath hg38 (UCSC)CORO6  -     chr17:29614756-29621423 -  17q11.2   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)CORO6  -     17q11.2   [Description]    (hg19-Feb_2009)
EnsemblCORO6 - 17q11.2 [CytoView hg19]  CORO6 - 17q11.2 [CytoView hg38]
Mapping of homologs : NCBICORO6 [Mapview hg19]  CORO6 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AF193039 AF447884 AF447885 AK027777 AK092430
RefSeq transcript (Entrez)NM_001351301 NM_001351302 NM_032854
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)CORO6
Cluster EST : UnigeneHs.143046 [ NCBI ]
CGAP (NCI)Hs.143046
Alternative Splicing GalleryENSG00000167549
Gene ExpressionCORO6 [ NCBI-GEO ]   CORO6 [ EBI - ARRAY_EXPRESS ]   CORO6 [ SEEK ]   CORO6 [ MEM ]
Gene Expression Viewer (FireBrowse)CORO6 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)84940
GTEX Portal (Tissue expression)CORO6
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ6QEF8   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ6QEF8  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ6QEF8
Splice isoforms : SwissVarQ6QEF8
PhosPhoSitePlusQ6QEF8
Domaine pattern : Prosite (Expaxy)WD_REPEATS_1 (PS00678)    WD_REPEATS_2 (PS50082)    WD_REPEATS_REGION (PS50294)   
Domains : Interpro (EBI)Apc4_WD40_dom    CORO6    Coronin    DUF1899    WD40/YVTN_repeat-like_dom    WD40_repeat    WD40_repeat_CS    WD40_repeat_dom   
Domain families : Pfam (Sanger)ANAPC4_WD40 (PF12894)    DUF1899 (PF08953)    WD40 (PF00400)   
Domain families : Pfam (NCBI)pfam12894    pfam08953    pfam00400   
Domain families : Smart (EMBL)DUF1899 (SM01166)  WD40 (SM00320)  
Conserved Domain (NCBI)CORO6
DMDM Disease mutations84940
Blocks (Seattle)CORO6
SuperfamilyQ6QEF8
Human Protein AtlasENSG00000167549
Peptide AtlasQ6QEF8
HPRD08607
IPIIPI00903139   IPI00789933   IPI00034860   IPI00903270   IPI00783124   IPI00791485   
Protein Interaction databases
DIP (DOE-UCLA)Q6QEF8
IntAct (EBI)Q6QEF8
FunCoupENSG00000167549
BioGRIDCORO6
STRING (EMBL)CORO6
ZODIACCORO6
Ontologies - Pathways
QuickGOQ6QEF8
Ontology : AmiGOprotein binding  actin cytoskeleton  actin cytoskeleton organization  actin filament binding  
Ontology : EGO-EBIprotein binding  actin cytoskeleton  actin cytoskeleton organization  actin filament binding  
NDEx NetworkCORO6
Atlas of Cancer Signalling NetworkCORO6
Wikipedia pathwaysCORO6
Orthology - Evolution
OrthoDB84940
GeneTree (enSembl)ENSG00000167549
Phylogenetic Trees/Animal Genes : TreeFamCORO6
HOVERGENQ6QEF8
HOGENOMQ6QEF8
Homologs : HomoloGeneCORO6
Homology/Alignments : Family Browser (UCSC)CORO6
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerCORO6 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)CORO6
dbVarCORO6
ClinVarCORO6
1000_GenomesCORO6 
Exome Variant ServerCORO6
ExAC (Exome Aggregation Consortium)CORO6 (select the gene name)
Genetic variants : HAPMAP84940
Genomic Variants (DGV)CORO6 [DGVbeta]
DECIPHERCORO6 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisCORO6 
Mutations
ICGC Data PortalCORO6 
TCGA Data PortalCORO6 
Broad Tumor PortalCORO6
OASIS PortalCORO6 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICCORO6  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDCORO6
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch CORO6
DgiDB (Drug Gene Interaction Database)CORO6
DoCM (Curated mutations)CORO6 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)CORO6 (select a term)
intoGenCORO6
Cancer3DCORO6(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenCORO6
Genetic Testing Registry CORO6
NextProtQ6QEF8 [Medical]
TSGene84940
GENETestsCORO6
Target ValidationCORO6
Huge Navigator CORO6 [HugePedia]
snp3D : Map Gene to Disease84940
BioCentury BCIQCORO6
ClinGenCORO6
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD84940
Chemical/Pharm GKB GenePA134869901
Clinical trialCORO6
Miscellaneous
canSAR (ICR)CORO6 (select the gene name)
Probes
Litterature
PubMed12 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineCORO6
EVEXCORO6
GoPubMedCORO6
iHOPCORO6
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Aug 1 16:12:43 CEST 2017

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