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CORO7 (coronin 7)

Identity

Alias_symbol (synonym)FLJ22021
Other alias0610011B16Rik
CRN7
POD1
HGNC (Hugo) CORO7
LocusID (NCBI) 79585
Atlas_Id 54230
Location 16p13.3  [Link to chromosome band 16p13]
Location_base_pair Starts at 4354542 and ends at 4416961 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)		Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
CHID1 (11p15.5) / CORO7 (16p13.3)CORO7 (16p13.3) / CLEC16A (16p13.13)CORO7 (16p13.3) / GFOD2 (16q22.1)
CORO7 (16p13.3) / PAM16 (16p13.3)KAT6B (10q22.2) / CORO7 (16p13.3)PAM16 (16p13.3) / CORO7 (16p13.3)
CORO7 16p13.3 / CLEC16A 16p13.13CORO7 16p13.3 / GFOD2 16q22.1KAT6B 10q22.2 / CORO7 16p13.3
PAM16 16p13.3 / CORO7 16p13.3

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 

Other Solid tumors implicated (Data extracted from papers in the Atlas) [ 5 ]
  t(10;16)(q22;p13) KAT6B/CORO7
t(11;16)(p15;p13) CHID1/CORO7
t(16;16)(p13;p13) PAM16/CORO7
t(16;16)(p13;p13) CORO7/CLEC16A
t(16;16)(p13;q22) CORO7/GFOD2

External links

Nomenclature
HGNC (Hugo)CORO7   26161
Cards
Entrez_Gene (NCBI)CORO7  79585  coronin 7
Aliases0610011B16Rik; CRN7; POD1
GeneCards (Weizmann)CORO7
Ensembl hg19 (Hinxton)ENSG00000262246 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000262246 [Gene_View]  chr16:4354542-4416961 [Contig_View]  CORO7 [Vega]
ICGC DataPortalENSG00000262246
TCGA cBioPortalCORO7
AceView (NCBI)CORO7
Genatlas (Paris)CORO7
WikiGenes79585
SOURCE (Princeton)CORO7
Genetics Home Reference (NIH)CORO7
Genomic and cartography
GoldenPath hg38 (UCSC)CORO7  -     chr16:4354542-4416961 -  16p13.3   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)CORO7  -     16p13.3   [Description]    (hg19-Feb_2009)
EnsemblCORO7 - 16p13.3 [CytoView hg19]  CORO7 - 16p13.3 [CytoView hg38]
Mapping of homologs : NCBICORO7 [Mapview hg19]  CORO7 [Mapview hg38]
OMIM611668   
Gene and transcription
Genbank (Entrez)AK025674 AK094596 AK097238 AK126176 AK294045
RefSeq transcript (Entrez)NM_001201472 NM_001201473 NM_001351729 NM_024535
RefSeq genomic (Entrez)NC_000016 NC_018927 NG_052966 NT_187608
Consensus coding sequences : CCDS (NCBI)CORO7
Cluster EST : UnigeneHs.739021 [ NCBI ]
CGAP (NCI)Hs.739021
Alternative Splicing GalleryENSG00000262246
Gene ExpressionCORO7 [ NCBI-GEO ]   CORO7 [ EBI - ARRAY_EXPRESS ]   CORO7 [ SEEK ]   CORO7 [ MEM ]
Gene Expression Viewer (FireBrowse)CORO7 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)79585
GTEX Portal (Tissue expression)CORO7
Human Protein AtlasENSG00000262246-CORO7 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtP57737   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtP57737  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProP57737
Splice isoforms : SwissVarP57737
PhosPhoSitePlusP57737
Domaine pattern : Prosite (Expaxy)WD_REPEATS_1 (PS00678)    WD_REPEATS_2 (PS50082)    WD_REPEATS_REGION (PS50294)   
Domains : Interpro (EBI)CORO7    Coronin    DUF1899    G-protein_beta_WD-40_rep    WD40/YVTN_repeat-like_dom    WD40_repeat    WD40_repeat_CS    WD40_repeat_dom   
Domain families : Pfam (Sanger)DUF1899 (PF08953)    WD40 (PF00400)   
Domain families : Pfam (NCBI)pfam08953    pfam00400   
Domain families : Smart (EMBL)DUF1899 (SM01166)  WD40 (SM00320)  
Conserved Domain (NCBI)CORO7
DMDM Disease mutations79585
Blocks (Seattle)CORO7
SuperfamilyP57737
Human Protein Atlas [tissue]ENSG00000262246-CORO7 [tissue]
Peptide AtlasP57737
HPRD07975
IPIIPI00027996   IPI00940326   IPI01013880   IPI00908640   IPI00981343   
Protein Interaction databases
DIP (DOE-UCLA)P57737
IntAct (EBI)P57737
FunCoupENSG00000262246
BioGRIDCORO7
STRING (EMBL)CORO7
ZODIACCORO7
Ontologies - Pathways
QuickGOP57737
Ontology : AmiGOGolgi membrane  actin binding  protein binding  Golgi apparatus  trans-Golgi network  cytosol  Golgi to endosome transport  protein transport  membrane  integral component of membrane  actin filament polymerization  cytoplasmic vesicle  
Ontology : EGO-EBIGolgi membrane  actin binding  protein binding  Golgi apparatus  trans-Golgi network  cytosol  Golgi to endosome transport  protein transport  membrane  integral component of membrane  actin filament polymerization  cytoplasmic vesicle  
NDEx NetworkCORO7
Atlas of Cancer Signalling NetworkCORO7
Wikipedia pathwaysCORO7
Orthology - Evolution
OrthoDB79585
GeneTree (enSembl)ENSG00000262246
Phylogenetic Trees/Animal Genes : TreeFamCORO7
HOVERGENP57737
HOGENOMP57737
Homologs : HomoloGeneCORO7
Homology/Alignments : Family Browser (UCSC)CORO7
Gene fusions - Rearrangements
Fusion : MitelmanCHID1/CORO7 [11p15.5/16p13.3]  [t(11;16)(p15;p13)]  
Fusion : MitelmanCORO7/CLEC16A [16p13.3/16p13.13]  [t(16;16)(p13;p13)]  
Fusion : MitelmanCORO7/GFOD2 [16p13.3/16q22.1]  [t(16;16)(p13;q22)]  
Fusion : MitelmanKAT6B/CORO7 [10q22.2/16p13.3]  [t(10;16)(q22;p13)]  
Fusion : MitelmanPAM16/CORO7 [16p13.3/16p13.3]  [t(16;16)(p13;p13)]  
Fusion: TCGA_MDACCCORO7 16p13.3 CLEC16A 16p13.13 PRAD
Fusion: TCGA_MDACCCORO7 16p13.3 GFOD2 16q22.1 PRAD
Fusion: TCGA_MDACCKAT6B 10q22.2 CORO7 16p13.3 PRAD
Fusion: TCGA_MDACCPAM16 16p13.3 CORO7 16p13.3 BRCA
Fusion PortalCORO7 16p13.3 CLEC16A 16p13.13 PRAD
Fusion PortalCORO7 16p13.3 GFOD2 16q22.1 PRAD
Fusion PortalKAT6B 10q22.2 CORO7 16p13.3 PRAD
Fusion PortalPAM16 16p13.3 CORO7 16p13.3 BRCA
Fusion : QuiverCORO7
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerCORO7 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)CORO7
dbVarCORO7
ClinVarCORO7
1000_GenomesCORO7 
Exome Variant ServerCORO7
ExAC (Exome Aggregation Consortium)ENSG00000262246
GNOMAD BrowserENSG00000262246
Genetic variants : HAPMAP79585
Genomic Variants (DGV)CORO7 [DGVbeta]
DECIPHERCORO7 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisCORO7 
Mutations
ICGC Data PortalCORO7 
TCGA Data PortalCORO7 
Broad Tumor PortalCORO7
OASIS PortalCORO7 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICCORO7  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDCORO7
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch CORO7
DgiDB (Drug Gene Interaction Database)CORO7
DoCM (Curated mutations)CORO7 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)CORO7 (select a term)
intoGenCORO7
Cancer3DCORO7(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM611668   
Orphanet
DisGeNETCORO7
MedgenCORO7
Genetic Testing Registry CORO7
NextProtP57737 [Medical]
TSGene79585
GENETestsCORO7
Target ValidationCORO7
Huge Navigator CORO7 [HugePedia]
snp3D : Map Gene to Disease79585
BioCentury BCIQCORO7
ClinGenCORO7
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD79585
Chemical/Pharm GKB GenePA134910806
Clinical trialCORO7
Miscellaneous
canSAR (ICR)CORO7 (select the gene name)
Probes
Litterature
PubMed20 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineCORO7
EVEXCORO7
GoPubMedCORO7
iHOPCORO7
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Wed Feb 28 13:07:28 CET 2018
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