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CORT (cortistatin)

Identity

Alias_symbol (synonym)MGC32686
Other aliasCST-14
CST-17
CST-29
HGNC (Hugo) CORT
LocusID (NCBI) 1325
Atlas_Id 55863
Location 1p36.22  [Link to chromosome band 1p36]
Location_base_pair Starts at 10449719 and ends at 10452003 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
DFFA (1p36.22) / CORT (1p36.22)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)CORT   2257
Cards
Entrez_Gene (NCBI)CORT  1325  cortistatin
AliasesCST-14; CST-17; CST-29
GeneCards (Weizmann)CORT
Ensembl hg19 (Hinxton)ENSG00000241563 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000241563 [Gene_View]  chr1:10449719-10452003 [Contig_View]  CORT [Vega]
ICGC DataPortalENSG00000241563
TCGA cBioPortalCORT
AceView (NCBI)CORT
Genatlas (Paris)CORT
WikiGenes1325
SOURCE (Princeton)CORT
Genetics Home Reference (NIH)CORT
Genomic and cartography
GoldenPath hg38 (UCSC)CORT  -     chr1:10449719-10452003 +  1p36.22   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)CORT  -     1p36.22   [Description]    (hg19-Feb_2009)
EnsemblCORT - 1p36.22 [CytoView hg19]  CORT - 1p36.22 [CytoView hg38]
Mapping of homologs : NCBICORT [Mapview hg19]  CORT [Mapview hg38]
OMIM602784   
Gene and transcription
Genbank (Entrez)AB000263 AF013252 AF086433 AV750349 AW205880
RefSeq transcript (Entrez)NM_001302
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)CORT
Cluster EST : UnigeneHs.412311 [ NCBI ]
CGAP (NCI)Hs.412311
Alternative Splicing GalleryENSG00000241563
Gene ExpressionCORT [ NCBI-GEO ]   CORT [ EBI - ARRAY_EXPRESS ]   CORT [ SEEK ]   CORT [ MEM ]
Gene Expression Viewer (FireBrowse)CORT [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)1325
GTEX Portal (Tissue expression)CORT
Protein : pattern, domain, 3D structure
UniProt/SwissProtO00230   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtO00230  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProO00230
Splice isoforms : SwissVarO00230
PhosPhoSitePlusO00230
Domains : Interpro (EBI)Somatostatin    Somatostatin/Cortistatin_C   
Domain families : Pfam (Sanger)Somatostatin (PF03002)   
Domain families : Pfam (NCBI)pfam03002   
Conserved Domain (NCBI)CORT
DMDM Disease mutations1325
Blocks (Seattle)CORT
SuperfamilyO00230
Human Protein AtlasENSG00000241563
Peptide AtlasO00230
HPRD04150
IPIIPI00010859   
Protein Interaction databases
DIP (DOE-UCLA)O00230
IntAct (EBI)O00230
FunCoupENSG00000241563
BioGRIDCORT
STRING (EMBL)CORT
ZODIACCORT
Ontologies - Pathways
QuickGOO00230
Ontology : AmiGOresolution of meiotic recombination intermediates  G-protein coupled receptor binding  chromatin binding  double-stranded DNA binding  neuropeptide hormone activity  extracellular region  extracellular space  mitotic recombination  adenylate cyclase-inhibiting G-protein coupled receptor signaling pathway  chemical synaptic transmission  replication fork processing  interstrand cross-link repair  Fanconi anaemia nuclear complex  FANCM-MHF complex  
Ontology : EGO-EBIresolution of meiotic recombination intermediates  G-protein coupled receptor binding  chromatin binding  double-stranded DNA binding  neuropeptide hormone activity  extracellular region  extracellular space  mitotic recombination  adenylate cyclase-inhibiting G-protein coupled receptor signaling pathway  chemical synaptic transmission  replication fork processing  interstrand cross-link repair  Fanconi anaemia nuclear complex  FANCM-MHF complex  
NDEx NetworkCORT
Atlas of Cancer Signalling NetworkCORT
Wikipedia pathwaysCORT
Orthology - Evolution
OrthoDB1325
GeneTree (enSembl)ENSG00000241563
Phylogenetic Trees/Animal Genes : TreeFamCORT
HOVERGENO00230
HOGENOMO00230
Homologs : HomoloGeneCORT
Homology/Alignments : Family Browser (UCSC)CORT
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerCORT [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)CORT
dbVarCORT
ClinVarCORT
1000_GenomesCORT 
Exome Variant ServerCORT
ExAC (Exome Aggregation Consortium)CORT (select the gene name)
Genetic variants : HAPMAP1325
Genomic Variants (DGV)CORT [DGVbeta]
DECIPHERCORT [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisCORT 
Mutations
ICGC Data PortalCORT 
TCGA Data PortalCORT 
Broad Tumor PortalCORT
OASIS PortalCORT [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICCORT  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDCORT
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch CORT
DgiDB (Drug Gene Interaction Database)CORT
DoCM (Curated mutations)CORT (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)CORT (select a term)
intoGenCORT
Cancer3DCORT(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM602784   
Orphanet
MedgenCORT
Genetic Testing Registry CORT
NextProtO00230 [Medical]
TSGene1325
GENETestsCORT
Target ValidationCORT
Huge Navigator CORT [HugePedia]
snp3D : Map Gene to Disease1325
BioCentury BCIQCORT
ClinGenCORT
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD1325
Chemical/Pharm GKB GenePA26773
Clinical trialCORT
Miscellaneous
canSAR (ICR)CORT (select the gene name)
Probes
Litterature
PubMed22 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineCORT
EVEXCORT
GoPubMedCORT
iHOPCORT
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Sep 25 19:03:25 CEST 2017

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