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COX1 (cytochrome c oxidase subunit I)

Identity

Other namesCOI
MTCO1
HGNC (Hugo) MT-CO1
LocusID (NCBI) 4512
Atlas_Id 55919
Location M  [Link to chromosome band ]
Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute


External links

Nomenclature
HGNC (Hugo)MT-CO1   7419
Cards
Entrez_Gene (NCBI)COX1  4512  cytochrome c oxidase subunit I
AliasesCOI; MTCO1
GeneCards (Weizmann)COX1
Ensembl hg19 (Hinxton) [Gene_View]  - [Contig_View]  COX1 [Vega]
Ensembl hg38 (Hinxton) [Gene_View]  - [Contig_View]  COX1 [Vega]
TCGA cBioPortalCOX1
AceView (NCBI)COX1
Genatlas (Paris)COX1
WikiGenes4512
SOURCE (Princeton)COX1
Genomic and cartography
GoldenPath hg19 (UCSC)COX1  -  
GoldenPath hg38 (UCSC)COX1  -  
EnsemblCOX1 - [CytoView hg19]  COX1 - [CytoView hg38]
Mapping of homologs : NCBICOX1 [Mapview hg19]  COX1 [Mapview hg38]
OMIM500008   516030   540000   
Gene and transcription
Genbank (Entrez)-
RefSeq transcript (Entrez)
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)COX1
Gene ExpressionCOX1 [ NCBI-GEO ]   COX1 [ EBI - ARRAY_EXPRESS ]   COX1 [ SEEK ]   COX1 [ MEM ]
Gene Expression Viewer (FireBrowse)COX1 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)4512
GTEX Portal (Tissue expression)COX1
Protein : pattern, domain, 3D structure
UniProt/SwissProtP00395 (Uniprot)
NextProtP00395  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProP00395
Splice isoforms : SwissVarP00395 (Swissvar)
Catalytic activity : Enzyme1.9.3.1 [ Enzyme-Expasy ]   1.9.3.11.9.3.1 [ IntEnz-EBI ]   1.9.3.1 [ BRENDA ]   1.9.3.1 [ KEGG ]   
PhosPhoSitePlusP00395
Domaine pattern : Prosite (Expaxy)COX1 (PS50855)    COX1_CUB (PS00077)   
Domains : Interpro (EBI)COX1    Cyt_c_Oxase_su1_BS    Cyt_c_Oxase_su1_dom   
Domain families : Pfam (Sanger)COX1 (PF00115)   
Domain families : Pfam (NCBI)pfam00115   
DMDM Disease mutations4512
Blocks (Seattle)COX1
SuperfamilyP00395
Peptide AtlasP00395
IPIIPI00464968   
Protein Interaction databases
DIP (DOE-UCLA)P00395
IntAct (EBI)P00395
BioGRIDCOX1
STRING (EMBL)COX1
ZODIACCOX1
Ontologies - Pathways
QuickGOP00395
Ontology : AmiGO
Ontology : EGO-EBI
Pathways : KEGGOxidative phosphorylation    Cardiac muscle contraction    Non-alcoholic fatty liver disease (NAFLD)    Alzheimer's disease    Parkinson's disease    Huntington's disease   
NDEx NetworkCOX1
Atlas of Cancer Signalling NetworkCOX1
Wikipedia pathwaysCOX1
Orthology - Evolution
OrthoDB4512
Phylogenetic Trees/Animal Genes : TreeFamMT-CO1
Homologs : HomoloGeneCOX1
Homology/Alignments : Family Browser (UCSC)COX1
Gene fusions - Rearrangements
Polymorphisms : SNP, variants
NCBI Variation ViewerCOX1 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)COX1
dbVarCOX1
ClinVarCOX1
1000_GenomesCOX1 
Exome Variant ServerCOX1
ExAC (Exome Aggregation Consortium)COX1 (select the gene name)
Genetic variants : HAPMAP4512
Genomic Variants (DGV)COX1 [DGVbeta]
Mutations
ICGC Data PortalMT-CO1 
TCGA Data PortalMT-CO1 
Broad Tumor PortalMT-CO1
OASIS PortalMT-CO1 [ Somatic mutations - Copy number]
BioMutasearch COX1
DgiDB (Drug Gene Interaction Database)COX1
DoCM (Curated mutations)COX1 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)COX1 (select a term)
intoGenCOX1
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] 
Diseases
DECIPHER (Syndromes)-  
CONAN: Copy Number AnalysisCOX1 
Mutations and Diseases : HGMDMT-CO1
OMIM500008    516030    540000   
MedgenCOX1
Genetic Testing Registry COX1
NextProtP00395 [Medical]
TSGene4512
GENETestsCOX1
Huge Navigator MT-CO1 [HugePedia]
snp3D : Map Gene to Disease4512
BioCentury BCIQCOX1
ClinGenCOX1
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD4512
Chemical/Pharm GKB GenePA31225
Clinical trialCOX1
Miscellaneous
canSAR (ICR)COX1 (select the gene name)
Probes
Litterature
PubMed51 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineCOX1
EVEXCOX1
GoPubMedCOX1
iHOPCOX1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Sep 19 18:43:38 CEST 2016

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