Atlas of Genetics and Cytogenetics in Oncology and Haematology


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COX1 (cytochrome c oxidase subunit I)

Identity

Other namesCOI
MTCO1
HGNC (Hugo) MT-CO1
LocusID (NCBI) 4512
Location mitochondria
Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

External links

Nomenclature
HGNC (Hugo)MT-CO1   7419
Cards
Entrez_Gene (NCBI)COX1  4512  cytochrome c oxidase subunit I
GeneCards (Weizmann)COX1
Ensembl (Hinxton) [Gene_View]  - [Contig_View]  COX1 [Vega]
cBioPortalCOX1
AceView (NCBI)COX1
Genatlas (Paris)COX1
WikiGenes4512
SOURCE (Princeton)
Genomic and cartography
GoldenPath (UCSC)COX1  -  mitochondria
EnsemblCOX1 - [CytoView]
Mapping of homologs : NCBICOX1 [Mapview]
OMIM500008   516030   540000   
Gene and transcription
Genbank (Entrez)-
RefSeq transcript (Entrez)
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)COX1
Gene ExpressionCOX1 [ NCBI-GEO ]     COX1 [ SEEK ]   COX1 [ MEM ]
Protein : pattern, domain, 3D structure
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
DMDM Disease mutations4512
IPIIPI00464968   
Protein Interaction databases
BioGRIDCOX1
IntegromeDBCOX1
STRING (EMBL)COX1
Ontologies - Pathways
Ontology : AmiGO
Ontology : EGO-EBI
Pathways : KEGGOxidative phosphorylation    Cardiac muscle contraction    Non-alcoholic fatty liver disease (NAFLD)    Alzheimer's disease    Parkinson's disease    Huntington's disease   
Protein Interaction DatabaseCOX1
Wikipedia pathwaysCOX1
Gene fusion - rearrangments
Polymorphisms : SNP, mutations, diseases
SNP Single Nucleotide Polymorphism (NCBI)COX1
snp3D : Map Gene to Disease4512
SNP (GeneSNP Utah)COX1
SNP : HGBaseCOX1
Genetic variants : HAPMAPCOX1
Exome VariantCOX1
1000_GenomesCOX1 
Mutations and Diseases : HGMDMT-CO1
Genomic VariantsCOX1  COX1 [DGVbeta]
dbVarCOX1
ClinVarCOX1
Pred. of missensesPolyPhen-2  SIFT(SG)  SIFT(JCVI)  Align-GVGD  MutAssessor  Mutanalyser  
Pred. splicesGeneSplicer  Human Splicing Finder  MaxEntScan  
Diseases
OMIM500008    516030    540000   
MedgenCOX1
GENETestsCOX1
Disease Genetic AssociationMT-CO1
Huge Navigator MT-CO1 [HugePedia]  MT-CO1 [HugeCancerGEM]
General knowledge
Homologs : HomoloGeneCOX1
Homology/Alignments : Family Browser (UCSC)COX1
Phylogenetic Trees/Animal Genes : TreeFamMT-CO1
Chemical/Protein Interactions : CTD4512
Chemical/Pharm GKB GenePA31225
Clinical trialCOX1
Other databases
Probes
Litterature
PubMed46 Pubmed reference(s) in Entrez
CoreMineCOX1
iHOPCOX1
OncoSearchCOX1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

Contributor(s)

Written09-2002Dessen P, Le Minor S
Updated12-2013Dessen P

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Sat Jul 26 14:28:14 CEST 2014

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