Atlas of Genetics and Cytogenetics in Oncology and Haematology


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COX11 (cytochrome c oxidase copper chaperone COX11)

Identity

Alias (NCBI)COX11P
HGNC (Hugo) COX11
HGNC Alias symbCOX11P
HGNC Alias namecytochrome c oxidase subunit 11
 cytochrome c oxidase assembly protein COX11
HGNC Previous nameCOX11 (yeast) homolog, cytochrome c oxidase assembly protein
 cytochrome c oxidase assembly homolog 11 (yeast)
 COX11, cytochrome c oxidase copper chaperone
LocusID (NCBI) 1353
Atlas_Id 53272
Location 17q22  [Link to chromosome band 17q22]
Location_base_pair Starts at 54960422 and ends at 54968654 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 



External links

 

Nomenclature
HGNC (Hugo)COX11   2261
Cards
Entrez_Gene (NCBI)COX11    cytochrome c oxidase copper chaperone COX11
AliasesCOX11P
GeneCards (Weizmann)COX11
Ensembl hg19 (Hinxton)ENSG00000166260 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000166260 [Gene_View]  ENSG00000166260 [Sequence]  chr17:54960422-54968654 [Contig_View]  COX11 [Vega]
ICGC DataPortalENSG00000166260
TCGA cBioPortalCOX11
AceView (NCBI)COX11
Genatlas (Paris)COX11
SOURCE (Princeton)COX11
Genetics Home Reference (NIH)COX11
Genomic and cartography
GoldenPath hg38 (UCSC)COX11  -     chr17:54960422-54968654 -  17q22   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)COX11  -     17q22   [Description]    (hg19-Feb_2009)
GoldenPathCOX11 - 17q22 [CytoView hg19]  COX11 - 17q22 [CytoView hg38]
ImmunoBaseENSG00000166260
Genome Data Viewer NCBICOX11 [Mapview hg19]  
OMIM603648   
Gene and transcription
Genbank (Entrez)AF044321 AI500638 AI828544 AK054819 AK124809
RefSeq transcript (Entrez)NM_001162861 NM_001162862 NM_001321518 NM_004375
Consensus coding sequences : CCDS (NCBI)COX11
Gene ExpressionCOX11 [ NCBI-GEO ]   COX11 [ EBI - ARRAY_EXPRESS ]   COX11 [ SEEK ]   COX11 [ MEM ]
Gene Expression Viewer (FireBrowse)COX11 [ Firebrowse - Broad ]
GenevisibleExpression of COX11 in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)1353
GTEX Portal (Tissue expression)COX11
Human Protein AtlasENSG00000166260-COX11 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9Y6N1   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9Y6N1  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9Y6N1
PhosPhoSitePlusQ9Y6N1
Domains : Interpro (EBI)CtaG/Cox11_dom_sf    Cyt_c_oxidase_assmbl_CtaG   
Domain families : Pfam (Sanger)CtaG_Cox11 (PF04442)   
Domain families : Pfam (NCBI)pfam04442   
Conserved Domain (NCBI)COX11
SuperfamilyQ9Y6N1
AlphaFold pdb e-kbQ9Y6N1   
Human Protein Atlas [tissue]ENSG00000166260-COX11 [tissue]
HPRD04709
Protein Interaction databases
DIP (DOE-UCLA)Q9Y6N1
IntAct (EBI)Q9Y6N1
BioGRIDCOX11
STRING (EMBL)COX11
ZODIACCOX11
Ontologies - Pathways
QuickGOQ9Y6N1
Ontology : AmiGOcopper ion binding  protein binding  mitochondrion  electron transfer activity  electron transport chain  intrinsic component of mitochondrial inner membrane  integral component of mitochondrial inner membrane  protein-containing complex  negative regulation of glucokinase activity  metal ion homeostasis  
Ontology : EGO-EBIcopper ion binding  protein binding  mitochondrion  electron transfer activity  electron transport chain  intrinsic component of mitochondrial inner membrane  integral component of mitochondrial inner membrane  protein-containing complex  negative regulation of glucokinase activity  metal ion homeostasis  
Pathways : KEGGKEGG_OXIDATIVE_PHOSPHORYLATION   
NDEx NetworkCOX11
Atlas of Cancer Signalling NetworkCOX11
Wikipedia pathwaysCOX11
Orthology - Evolution
OrthoDB1353
GeneTree (enSembl)ENSG00000166260
Phylogenetic Trees/Animal Genes : TreeFamCOX11
Homologs : HomoloGeneCOX11
Homology/Alignments : Family Browser (UCSC)COX11
Gene fusions - Rearrangements
Fusion : QuiverCOX11
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerCOX11 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)COX11
dbVarCOX11
ClinVarCOX11
MonarchCOX11
1000_GenomesCOX11 
Exome Variant ServerCOX11
GNOMAD BrowserENSG00000166260
Varsome BrowserCOX11
ACMGCOX11 variants
VarityQ9Y6N1
Genomic Variants (DGV)COX11 [DGVbeta]
DECIPHERCOX11 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisCOX11 
Mutations
ICGC Data PortalCOX11 
TCGA Data PortalCOX11 
Broad Tumor PortalCOX11
OASIS PortalCOX11 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICCOX11  [overview]  [genome browser]  [tissue]  [distribution]  
Somatic Mutations in Cancer : COSMIC3DCOX11
Mutations and Diseases : HGMDCOX11
LOVD (Leiden Open Variation Database)[gene] [transcripts] [variants]
BioMutaCOX11
DgiDB (Drug Gene Interaction Database)COX11
DoCM (Curated mutations)COX11
CIViC (Clinical Interpretations of Variants in Cancer)COX11
Cancer3DCOX11
Impact of mutations[PolyPhen2] [Provean] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM603648   
Orphanet
DisGeNETCOX11
MedgenCOX11
Genetic Testing Registry COX11
NextProtQ9Y6N1 [Medical]
GENETestsCOX11
Target ValidationCOX11
Huge Navigator COX11 [HugePedia]
ClinGenCOX11
Clinical trials, drugs, therapy
MyCancerGenomeCOX11
Protein Interactions : CTDCOX11
Pharm GKB GenePA26777
PharosQ9Y6N1
Clinical trialCOX11
Miscellaneous
canSAR (ICR)COX11
HarmonizomeCOX11
ARCHS4COX11
DataMed IndexCOX11
Probes
Litterature
PubMed34 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
EVEXCOX11
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Thu Jan 20 12:28:37 CET 2022

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