Atlas of Genetics and Cytogenetics in Oncology and Haematology


Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

X Y 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 NA

COX11 (COX11, cytochrome c oxidase copper chaperone)

Identity

Alias_namesCOX11 (yeast) homolog, cytochrome c oxidase assembly protein
cytochrome c oxidase assembly homolog 11 (yeast)
Alias_symbol (synonym)COX11P
Other alias
HGNC (Hugo) COX11
LocusID (NCBI) 1353
Atlas_Id 53272
Location 17q22  [Link to chromosome band 17q22]
Location_base_pair Starts at 54961206 and ends at 54968785 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)COX11   2261
Cards
Entrez_Gene (NCBI)COX11  1353  COX11, cytochrome c oxidase copper chaperone
AliasesCOX11P
GeneCards (Weizmann)COX11
Ensembl hg19 (Hinxton)ENSG00000166260 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000166260 [Gene_View]  chr17:54961206-54968785 [Contig_View]  COX11 [Vega]
ICGC DataPortalENSG00000166260
TCGA cBioPortalCOX11
AceView (NCBI)COX11
Genatlas (Paris)COX11
WikiGenes1353
SOURCE (Princeton)COX11
Genetics Home Reference (NIH)COX11
Genomic and cartography
GoldenPath hg38 (UCSC)COX11  -     chr17:54961206-54968785 -  17q22   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)COX11  -     17q22   [Description]    (hg19-Feb_2009)
EnsemblCOX11 - 17q22 [CytoView hg19]  COX11 - 17q22 [CytoView hg38]
Mapping of homologs : NCBICOX11 [Mapview hg19]  COX11 [Mapview hg38]
OMIM603648   
Gene and transcription
Genbank (Entrez)AF044321 AI500638 AI828544 AK054819 AK124809
RefSeq transcript (Entrez)NM_001162861 NM_001162862 NM_001321518 NM_004375
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)COX11
Cluster EST : UnigeneHs.657992 [ NCBI ]
CGAP (NCI)Hs.657992
Alternative Splicing GalleryENSG00000166260
Gene ExpressionCOX11 [ NCBI-GEO ]   COX11 [ EBI - ARRAY_EXPRESS ]   COX11 [ SEEK ]   COX11 [ MEM ]
Gene Expression Viewer (FireBrowse)COX11 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)1353
GTEX Portal (Tissue expression)COX11
Human Protein AtlasENSG00000166260-COX11 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9Y6N1   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9Y6N1  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9Y6N1
Splice isoforms : SwissVarQ9Y6N1
PhosPhoSitePlusQ9Y6N1
Domains : Interpro (EBI)CtaG/Cox11_dom    Cyt_c_oxidase_assmbl_CtaG   
Domain families : Pfam (Sanger)CtaG_Cox11 (PF04442)   
Domain families : Pfam (NCBI)pfam04442   
Conserved Domain (NCBI)COX11
DMDM Disease mutations1353
Blocks (Seattle)COX11
SuperfamilyQ9Y6N1
Human Protein Atlas [tissue]ENSG00000166260-COX11 [tissue]
Peptide AtlasQ9Y6N1
HPRD04709
IPIIPI00295394   IPI00938235   IPI00794128   
Protein Interaction databases
DIP (DOE-UCLA)Q9Y6N1
IntAct (EBI)Q9Y6N1
FunCoupENSG00000166260
BioGRIDCOX11
STRING (EMBL)COX11
ZODIACCOX11
Ontologies - Pathways
QuickGOQ9Y6N1
Ontology : AmiGOcytochrome-c oxidase activity  copper ion binding  mitochondrion  mitochondrial inner membrane  respiratory gaseous exchange  respiratory chain complex IV assembly  electron carrier activity  integral component of membrane  negative regulation of glucokinase activity  hydrogen ion transmembrane transport  
Ontology : EGO-EBIcytochrome-c oxidase activity  copper ion binding  mitochondrion  mitochondrial inner membrane  respiratory gaseous exchange  respiratory chain complex IV assembly  electron carrier activity  integral component of membrane  negative regulation of glucokinase activity  hydrogen ion transmembrane transport  
Pathways : KEGGOxidative phosphorylation   
NDEx NetworkCOX11
Atlas of Cancer Signalling NetworkCOX11
Wikipedia pathwaysCOX11
Orthology - Evolution
OrthoDB1353
GeneTree (enSembl)ENSG00000166260
Phylogenetic Trees/Animal Genes : TreeFamCOX11
HOVERGENQ9Y6N1
HOGENOMQ9Y6N1
Homologs : HomoloGeneCOX11
Homology/Alignments : Family Browser (UCSC)COX11
Gene fusions - Rearrangements
Tumor Fusion PortalCOX11
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerCOX11 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)COX11
dbVarCOX11
ClinVarCOX11
1000_GenomesCOX11 
Exome Variant ServerCOX11
ExAC (Exome Aggregation Consortium)ENSG00000166260
GNOMAD BrowserENSG00000166260
Genetic variants : HAPMAP1353
Genomic Variants (DGV)COX11 [DGVbeta]
DECIPHERCOX11 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisCOX11 
Mutations
ICGC Data PortalCOX11 
TCGA Data PortalCOX11 
Broad Tumor PortalCOX11
OASIS PortalCOX11 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICCOX11  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDCOX11
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
LOVD (Leiden Open Variation Database)MSeqDR-LSDB Mitochondrial Disease Locus Specific Database
BioMutasearch COX11
DgiDB (Drug Gene Interaction Database)COX11
DoCM (Curated mutations)COX11 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)COX11 (select a term)
intoGenCOX11
Cancer3DCOX11(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM603648   
Orphanet
DisGeNETCOX11
MedgenCOX11
Genetic Testing Registry COX11
NextProtQ9Y6N1 [Medical]
TSGene1353
GENETestsCOX11
Target ValidationCOX11
Huge Navigator COX11 [HugePedia]
snp3D : Map Gene to Disease1353
BioCentury BCIQCOX11
ClinGenCOX11
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD1353
Chemical/Pharm GKB GenePA26777
Clinical trialCOX11
Miscellaneous
canSAR (ICR)COX11 (select the gene name)
Probes
Litterature
PubMed18 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineCOX11
EVEXCOX11
GoPubMedCOX11
iHOPCOX11
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Tue Nov 21 14:08:41 CET 2017

Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

For comments and suggestions or contributions, please contact us

jlhuret@AtlasGeneticsOncology.org.