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COX16 (COX16, cytochrome c oxidase assembly homolog)

Identity

Alias_namesC14orf112
chromosome 14 open reading frame 112
COX16 cytochrome c oxidase assembly homolog (S. cerevisiae)
Alias_symbol (synonym)HSPC203
Other alias
HGNC (Hugo) COX16
LocusID (NCBI) 51241
Atlas_Id 62038
Location 14q24.2  [Link to chromosome band 14q24]
Location_base_pair Starts at 70325081 and ends at 70359731 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
SYNJ2BP (14q24.2) / COX16 (14q24.2)TMBIM6 (12q13.12) / COX16 (14q24.2)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)COX16   20213
Cards
Entrez_Gene (NCBI)COX16  51241  COX16, cytochrome c oxidase assembly homolog
AliasesC14orf112; HSPC203
GeneCards (Weizmann)COX16
Ensembl hg19 (Hinxton)ENSG00000133983 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000133983 [Gene_View]  chr14:70325081-70359731 [Contig_View]  COX16 [Vega]
ICGC DataPortalENSG00000133983
TCGA cBioPortalCOX16
AceView (NCBI)COX16
Genatlas (Paris)COX16
WikiGenes51241
SOURCE (Princeton)COX16
Genetics Home Reference (NIH)COX16
Genomic and cartography
GoldenPath hg38 (UCSC)COX16  -     chr14:70325081-70359731 -  14q24.2   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)COX16  -     14q24.2   [Description]    (hg19-Feb_2009)
EnsemblCOX16 - 14q24.2 [CytoView hg19]  COX16 - 14q24.2 [CytoView hg38]
Mapping of homologs : NCBICOX16 [Mapview hg19]  COX16 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AF151037 AF226729 AK290743 AW088547 BC001702
RefSeq transcript (Entrez)NM_001204090 NM_016468
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)COX16
Cluster EST : UnigeneHs.709581 [ NCBI ]
CGAP (NCI)Hs.709581
Alternative Splicing GalleryENSG00000133983
Gene ExpressionCOX16 [ NCBI-GEO ]   COX16 [ EBI - ARRAY_EXPRESS ]   COX16 [ SEEK ]   COX16 [ MEM ]
Gene Expression Viewer (FireBrowse)COX16 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)51241
GTEX Portal (Tissue expression)COX16
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9P0S2   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9P0S2  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9P0S2
Splice isoforms : SwissVarQ9P0S2
PhosPhoSitePlusQ9P0S2
Domains : Interpro (EBI)Cyt_c_Oxase_assmbl_COX16   
Domain families : Pfam (Sanger)COX16 (PF14138)   
Domain families : Pfam (NCBI)pfam14138   
Domain structure : Prodom (Prabi Lyon)Cyt_c_Oxase_assmbl_COX16 (PD076120)   
Conserved Domain (NCBI)COX16
DMDM Disease mutations51241
Blocks (Seattle)COX16
SuperfamilyQ9P0S2
Human Protein AtlasENSG00000133983
Peptide AtlasQ9P0S2
HPRD16591
IPIIPI00009365   IPI01025896   IPI00983904   
Protein Interaction databases
DIP (DOE-UCLA)Q9P0S2
IntAct (EBI)Q9P0S2
FunCoupENSG00000133983
BioGRIDCOX16
STRING (EMBL)COX16
ZODIACCOX16
Ontologies - Pathways
QuickGOQ9P0S2
Ontology : AmiGOmolecular_function  cellular_component  biological_process  integral component of membrane  mitochondrial membrane  
Ontology : EGO-EBImolecular_function  cellular_component  biological_process  integral component of membrane  mitochondrial membrane  
NDEx NetworkCOX16
Atlas of Cancer Signalling NetworkCOX16
Wikipedia pathwaysCOX16
Orthology - Evolution
OrthoDB51241
GeneTree (enSembl)ENSG00000133983
Phylogenetic Trees/Animal Genes : TreeFamCOX16
HOVERGENQ9P0S2
HOGENOMQ9P0S2
Homologs : HomoloGeneCOX16
Homology/Alignments : Family Browser (UCSC)COX16
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerCOX16 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)COX16
dbVarCOX16
ClinVarCOX16
1000_GenomesCOX16 
Exome Variant ServerCOX16
ExAC (Exome Aggregation Consortium)COX16 (select the gene name)
Genetic variants : HAPMAP51241
Genomic Variants (DGV)COX16 [DGVbeta]
DECIPHERCOX16 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisCOX16 
Mutations
ICGC Data PortalCOX16 
TCGA Data PortalCOX16 
Broad Tumor PortalCOX16
OASIS PortalCOX16 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICCOX16  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDCOX16
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch COX16
DgiDB (Drug Gene Interaction Database)COX16
DoCM (Curated mutations)COX16 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)COX16 (select a term)
intoGenCOX16
Cancer3DCOX16(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenCOX16
Genetic Testing Registry COX16
NextProtQ9P0S2 [Medical]
TSGene51241
GENETestsCOX16
Target ValidationCOX16
Huge Navigator COX16 [HugePedia]
snp3D : Map Gene to Disease51241
BioCentury BCIQCOX16
ClinGenCOX16
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD51241
Chemical/Pharm GKB GenePA162382755
Clinical trialCOX16
Miscellaneous
canSAR (ICR)COX16 (select the gene name)
Probes
Litterature
PubMed10 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineCOX16
EVEXCOX16
GoPubMedCOX16
iHOPCOX16
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Sep 18 13:05:16 CEST 2017

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