Atlas of Genetics and Cytogenetics in Oncology and Haematology


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COX19 (COX19 cytochrome c oxidase assembly factor)

Identity

Alias_namesCOX19 cytochrome c oxidase assembly homolog (S. cerevisiae)
cytochrome c oxidase assembly homolog 19 (S. cerevisiae)
Alias_symbol (synonym)MGC104475
Other alias-
HGNC (Hugo) COX19
LocusID (NCBI) 90639
Atlas_Id 62039
Location 7p22.3  [Link to chromosome band 7p22]
Location_base_pair Starts at 1004486 and ends at 1015235 bp from pter ( according to hg19-Feb_2009)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)COX19   28074
Cards
Entrez_Gene (NCBI)COX19  90639  COX19 cytochrome c oxidase assembly factor
Aliases
GeneCards (Weizmann)COX19
Ensembl hg19 (Hinxton) [Gene_View]  chr7:1004486-1015235 [Contig_View]  COX19 [Vega]
Ensembl hg38 (Hinxton) [Gene_View]  chr7:1004486-1015235 [Contig_View]  COX19 [Vega]
TCGA cBioPortalCOX19
AceView (NCBI)COX19
Genatlas (Paris)COX19
WikiGenes90639
SOURCE (Princeton)COX19
Genetics Home Reference (NIH)COX19
Genomic and cartography
GoldenPath hg19 (UCSC)COX19  -     chr7:1004486-1015235 -  7p22.3   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)COX19  -     7p22.3   [Description]    (hg38-Dec_2013)
EnsemblCOX19 - 7p22.3 [CytoView hg19]  COX19 - 7p22.3 [CytoView hg38]
Mapping of homologs : NCBICOX19 [Mapview hg19]  COX19 [Mapview hg38]
OMIM610429   
Gene and transcription
Genbank (Entrez)AA437231 AK023185 AY957566 BC042434 BC053372
RefSeq transcript (Entrez)NM_001031617
RefSeq genomic (Entrez)NC_000007 NC_018918 NT_007819 NW_004929329
Consensus coding sequences : CCDS (NCBI)COX19
Cluster EST : UnigeneHs.121593 [ NCBI ]
CGAP (NCI)Hs.121593
Gene ExpressionCOX19 [ NCBI-GEO ]   COX19 [ EBI - ARRAY_EXPRESS ]   COX19 [ SEEK ]   COX19 [ MEM ]
Gene Expression Viewer (FireBrowse)COX19 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)90639
GTEX Portal (Tissue expression)COX19
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ49B96   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ49B96  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ49B96
Splice isoforms : SwissVarQ49B96
PhosPhoSitePlusQ49B96
Domains : Interpro (EBI)CHCH    Cys_alpha_HP_mot_SF   
Domain families : Pfam (Sanger)CHCH (PF06747)   
Domain families : Pfam (NCBI)pfam06747   
Conserved Domain (NCBI)COX19
DMDM Disease mutations90639
Blocks (Seattle)COX19
SuperfamilyQ49B96
Peptide AtlasQ49B96
IPIIPI00413436   IPI00893198   
Protein Interaction databases
DIP (DOE-UCLA)Q49B96
IntAct (EBI)Q49B96
BioGRIDCOX19
STRING (EMBL)COX19
ZODIACCOX19
Ontologies - Pathways
QuickGOQ49B96
Ontology : AmiGOcytoplasm  mitochondrial intermembrane space  cytosol  aerobic respiration  mitochondrial respiratory chain complex IV assembly  
Ontology : EGO-EBIcytoplasm  mitochondrial intermembrane space  cytosol  aerobic respiration  mitochondrial respiratory chain complex IV assembly  
NDEx NetworkCOX19
Atlas of Cancer Signalling NetworkCOX19
Wikipedia pathwaysCOX19
Orthology - Evolution
OrthoDB90639
Phylogenetic Trees/Animal Genes : TreeFamCOX19
HOVERGENQ49B96
HOGENOMQ49B96
Homologs : HomoloGeneCOX19
Homology/Alignments : Family Browser (UCSC)COX19
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerCOX19 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)COX19
dbVarCOX19
ClinVarCOX19
1000_GenomesCOX19 
Exome Variant ServerCOX19
ExAC (Exome Aggregation Consortium)COX19 (select the gene name)
Genetic variants : HAPMAP90639
Genomic Variants (DGV)COX19 [DGVbeta]
DECIPHER (Syndromes)7:1004486-1015235  
CONAN: Copy Number AnalysisCOX19 
Mutations
ICGC Data PortalCOX19 
TCGA Data PortalCOX19 
Broad Tumor PortalCOX19
OASIS PortalCOX19 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICCOX19  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDCOX19
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
LOVD (Leiden Open Variation Database)MSeqDR-LSDB Mitochondrial Disease Locus Specific Database
BioMutasearch COX19
DgiDB (Drug Gene Interaction Database)COX19
DoCM (Curated mutations)COX19 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)COX19 (select a term)
intoGenCOX19
Cancer3DCOX19(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM610429   
Orphanet
MedgenCOX19
Genetic Testing Registry COX19
NextProtQ49B96 [Medical]
TSGene90639
GENETestsCOX19
Huge Navigator COX19 [HugePedia]
snp3D : Map Gene to Disease90639
BioCentury BCIQCOX19
ClinGenCOX19
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD90639
Chemical/Pharm GKB GenePA145008561
Clinical trialCOX19
Miscellaneous
canSAR (ICR)COX19 (select the gene name)
Probes
Litterature
PubMed10 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineCOX19
EVEXCOX19
GoPubMedCOX19
iHOPCOX19
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Mar 14 12:00:10 CET 2017

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