Atlas of Genetics and Cytogenetics in Oncology and Haematology


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COX2 (cytochrome c oxidase subunit II)

Identity

Other namesCOII
MTCO2
HGNC (Hugo) MT-CO2
LocusID (NCBI) 4513
Atlas_Id 55920
Location M  [Link to chromosome band ]
Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute


External links

Nomenclature
HGNC (Hugo)MT-CO2   7421
Cards
Entrez_Gene (NCBI)COX2  4513  cytochrome c oxidase subunit II
AliasesCOII; MTCO2
GeneCards (Weizmann)COX2
Ensembl hg19 (Hinxton) [Gene_View]  - [Contig_View]  COX2 [Vega]
Ensembl hg38 (Hinxton) [Gene_View]  - [Contig_View]  COX2 [Vega]
TCGA cBioPortalCOX2
AceView (NCBI)COX2
Genatlas (Paris)COX2
WikiGenes4513
SOURCE (Princeton)COX2
Genomic and cartography
GoldenPath hg19 (UCSC)COX2  -  
GoldenPath hg38 (UCSC)COX2  -  
EnsemblCOX2 - [CytoView hg19]  COX2 - [CytoView hg38]
Mapping of homologs : NCBICOX2 [Mapview hg19]  COX2 [Mapview hg38]
OMIM516040   540000   
Gene and transcription
Genbank (Entrez)-
RefSeq transcript (Entrez)
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)COX2
Gene ExpressionCOX2 [ NCBI-GEO ]   COX2 [ EBI - ARRAY_EXPRESS ]   COX2 [ SEEK ]   COX2 [ MEM ]
Gene Expression Viewer (FireBrowse)COX2 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)4513
GTEX Portal (Tissue expression)COX2
Protein : pattern, domain, 3D structure
UniProt/SwissProtP00403 (Uniprot)
NextProtP00403  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProP00403
Splice isoforms : SwissVarP00403 (Swissvar)
PhosPhoSitePlusP00403
Domaine pattern : Prosite (Expaxy)COX2 (PS00078)    COX2_CUA (PS50857)    COX2_TM (PS50999)   
Domains : Interpro (EBI)Copper_CuA    Cupredoxin    Cyt_c_oxidase_su2    Cyt_c_oxidase_su2_C    Cyt_c_oxidase_su2_TM_dom   
Domain families : Pfam (Sanger)COX2 (PF00116)    COX2_TM (PF02790)   
Domain families : Pfam (NCBI)pfam00116    pfam02790   
DMDM Disease mutations4513
Blocks (Seattle)COX2
PDB (SRS)3VRJ   
PDB (PDBSum)3VRJ   
PDB (IMB)3VRJ   
PDB (RSDB)3VRJ   
Structural Biology KnowledgeBase3VRJ   
SCOP (Structural Classification of Proteins)3VRJ   
CATH (Classification of proteins structures)3VRJ   
SuperfamilyP00403
Peptide AtlasP00403
IPIIPI00017510   IPI00930721   
Protein Interaction databases
DIP (DOE-UCLA)P00403
IntAct (EBI)P00403
BioGRIDCOX2
STRING (EMBL)COX2
ZODIACCOX2
Ontologies - Pathways
QuickGOP00403
Ontology : AmiGO
Ontology : EGO-EBI
Pathways : KEGGOxidative phosphorylation    Cardiac muscle contraction    Non-alcoholic fatty liver disease (NAFLD)    Alzheimer's disease    Parkinson's disease    Huntington's disease   
NDEx NetworkCOX2
Atlas of Cancer Signalling NetworkCOX2
Wikipedia pathwaysCOX2
Orthology - Evolution
OrthoDB4513
Phylogenetic Trees/Animal Genes : TreeFamMT-CO2
Homologs : HomoloGeneCOX2
Homology/Alignments : Family Browser (UCSC)COX2
Gene fusions - Rearrangements
Polymorphisms : SNP, variants
NCBI Variation ViewerCOX2 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)COX2
dbVarCOX2
ClinVarCOX2
1000_GenomesCOX2 
Exome Variant ServerCOX2
ExAC (Exome Aggregation Consortium)COX2 (select the gene name)
Genetic variants : HAPMAP4513
Genomic Variants (DGV)COX2 [DGVbeta]
Mutations
ICGC Data PortalMT-CO2 
TCGA Data PortalMT-CO2 
Broad Tumor PortalMT-CO2
OASIS PortalMT-CO2 [ Somatic mutations - Copy number]
BioMutasearch COX2
DgiDB (Drug Gene Interaction Database)COX2
DoCM (Curated mutations)COX2 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)COX2 (select a term)
intoGenCOX2
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] 
Diseases
DECIPHER (Syndromes)-  
CONAN: Copy Number AnalysisCOX2 
Mutations and Diseases : HGMDMT-CO2
OMIM516040    540000   
MedgenCOX2
Genetic Testing Registry COX2
NextProtP00403 [Medical]
TSGene4513
GENETestsCOX2
Huge Navigator MT-CO2 [HugePedia]
snp3D : Map Gene to Disease4513
BioCentury BCIQCOX2
ClinGenCOX2
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD4513
Chemical/Pharm GKB GenePA31227
Clinical trialCOX2
Miscellaneous
canSAR (ICR)COX2 (select the gene name)
Probes
Litterature
PubMed57 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineCOX2
EVEXCOX2
GoPubMedCOX2
iHOPCOX2
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Mon Sep 19 18:43:40 CEST 2016

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