Atlas of Genetics and Cytogenetics in Oncology and Haematology


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COX2 (cytochrome c oxidase subunit II)

Identity

Other namesCOII
MTCO2
HGNC (Hugo) MT-CO2
LocusID (NCBI) 4513
Location mitochondria
Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

External links

Nomenclature
HGNC (Hugo)MT-CO2   7421
Cards
Entrez_Gene (NCBI)COX2  4513  cytochrome c oxidase subunit II
GeneCards (Weizmann)COX2
Ensembl (Hinxton) [Gene_View]  - [Contig_View]  COX2 [Vega]
cBioPortalCOX2
AceView (NCBI)COX2
Genatlas (Paris)COX2
WikiGenes4513
SOURCE (Princeton)
Genomic and cartography
GoldenPath (UCSC)COX2  -  mitochondria
EnsemblCOX2 - [CytoView]
Mapping of homologs : NCBICOX2 [Mapview]
OMIM516040   540000   
Gene and transcription
Genbank (Entrez)-
RefSeq transcript (Entrez)
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)COX2
Gene ExpressionCOX2 [ NCBI-GEO ]     COX2 [ SEEK ]   COX2 [ MEM ]
Protein : pattern, domain, 3D structure
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
DMDM Disease mutations4513
IPIIPI00017510   IPI00930721   
Protein Interaction databases
BioGRIDCOX2
IntegromeDBCOX2
STRING (EMBL)COX2
Ontologies - Pathways
Ontology : AmiGO
Ontology : EGO-EBI
Pathways : KEGGOxidative phosphorylation    Cardiac muscle contraction    Non-alcoholic fatty liver disease (NAFLD)    Alzheimer's disease    Parkinson's disease    Huntington's disease   
Protein Interaction DatabaseCOX2
Wikipedia pathwaysCOX2
Gene fusion - rearrangments
Polymorphisms : SNP, mutations, diseases
SNP Single Nucleotide Polymorphism (NCBI)COX2
snp3D : Map Gene to Disease4513
SNP (GeneSNP Utah)COX2
SNP : HGBaseCOX2
Genetic variants : HAPMAPCOX2
Exome VariantCOX2
1000_GenomesCOX2 
Mutations and Diseases : HGMDMT-CO2
Mutations and Diseases : intOGenMT-CO2
Genomic VariantsCOX2  COX2 [DGVbeta]
dbVarCOX2
ClinVarCOX2
Pred. of missensesPolyPhen-2  SIFT(SG)  SIFT(JCVI)  Align-GVGD  MutAssessor  Mutanalyser  
Pred. splicesGeneSplicer  Human Splicing Finder  MaxEntScan  
Diseases
OMIM516040    540000   
MedgenCOX2
GENETestsCOX2
Disease Genetic AssociationMT-CO2
Huge Navigator MT-CO2 [HugePedia]  MT-CO2 [HugeCancerGEM]
General knowledge
Homologs : HomoloGeneCOX2
Homology/Alignments : Family Browser (UCSC)COX2
Phylogenetic Trees/Animal Genes : TreeFamMT-CO2
Chemical/Protein Interactions : CTD4513
Chemical/Pharm GKB GenePA31227
Clinical trialCOX2
Other databases
Probes
Litterature
PubMed50 Pubmed reference(s) in Entrez
CoreMineCOX2
iHOPCOX2
OncoSearchCOX2
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

Contributor(s)

Written09-2002Dessen P, Le Minor S
Updated12-2013Dessen P

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Tue Aug 26 16:42:58 CEST 2014

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