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COX20 (COX20, cytochrome c oxidase assembly factor)

Identity

Alias_namesFAM36A
family with sequence similarity 36, member A
COX20 Cox2 chaperone homolog (S. cerevisiae)
Alias_symbol (synonym)FLJ43269
Other alias
HGNC (Hugo) COX20
LocusID (NCBI) 116228
Atlas_Id 62040
Location 1q44  [Link to chromosome band 1q44]
Location_base_pair Starts at 244835306 and ends at 244845063 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
COX20 (1q44) / COX20 (1q44)COX20 (1q44) / SDCCAG8 (1q43)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)COX20   26970
Cards
Entrez_Gene (NCBI)COX20  116228  COX20, cytochrome c oxidase assembly factor
AliasesFAM36A
GeneCards (Weizmann)COX20
Ensembl hg19 (Hinxton)ENSG00000203667 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000203667 [Gene_View]  chr1:244835306-244845063 [Contig_View]  COX20 [Vega]
ICGC DataPortalENSG00000203667
TCGA cBioPortalCOX20
AceView (NCBI)COX20
Genatlas (Paris)COX20
WikiGenes116228
SOURCE (Princeton)COX20
Genetics Home Reference (NIH)COX20
Genomic and cartography
GoldenPath hg38 (UCSC)COX20  -     chr1:244835306-244845063 +  1q44   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)COX20  -     1q44   [Description]    (hg19-Feb_2009)
EnsemblCOX20 - 1q44 [CytoView hg19]  COX20 - 1q44 [CytoView hg38]
Mapping of homologs : NCBICOX20 [Mapview hg19]  COX20 [Mapview hg38]
OMIM220110   614698   
Gene and transcription
Genbank (Entrez)AF086182 AK000866 AK125259 AK130498 AK300760
RefSeq transcript (Entrez)NM_001312871 NM_001312872 NM_001312873 NM_001312874 NM_198076
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)COX20
Cluster EST : UnigeneHs.411490 [ NCBI ]
CGAP (NCI)Hs.411490
Alternative Splicing GalleryENSG00000203667
Gene ExpressionCOX20 [ NCBI-GEO ]   COX20 [ EBI - ARRAY_EXPRESS ]   COX20 [ SEEK ]   COX20 [ MEM ]
Gene Expression Viewer (FireBrowse)COX20 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)116228
GTEX Portal (Tissue expression)COX20
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ5RI15   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ5RI15  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ5RI15
Splice isoforms : SwissVarQ5RI15
PhosPhoSitePlusQ5RI15
Domains : Interpro (EBI)Cox20/FAM36A    FAM36A   
Domain families : Pfam (Sanger)DUF3767 (PF12597)   
Domain families : Pfam (NCBI)pfam12597   
Conserved Domain (NCBI)COX20
DMDM Disease mutations116228
Blocks (Seattle)COX20
SuperfamilyQ5RI15
Human Protein AtlasENSG00000203667
Peptide AtlasQ5RI15
HPRD13307
IPIIPI00607610   IPI00103057   
Protein Interaction databases
DIP (DOE-UCLA)Q5RI15
IntAct (EBI)Q5RI15
FunCoupENSG00000203667
BioGRIDCOX20
STRING (EMBL)COX20
ZODIACCOX20
Ontologies - Pathways
QuickGOQ5RI15
Ontology : AmiGOmitochondrion  mitochondrion  aerobic respiration  integral component of membrane  mitochondrial membrane  mitochondrial respiratory chain complex IV assembly  
Ontology : EGO-EBImitochondrion  mitochondrion  aerobic respiration  integral component of membrane  mitochondrial membrane  mitochondrial respiratory chain complex IV assembly  
NDEx NetworkCOX20
Atlas of Cancer Signalling NetworkCOX20
Wikipedia pathwaysCOX20
Orthology - Evolution
OrthoDB116228
GeneTree (enSembl)ENSG00000203667
Phylogenetic Trees/Animal Genes : TreeFamCOX20
HOVERGENQ5RI15
HOGENOMQ5RI15
Homologs : HomoloGeneCOX20
Homology/Alignments : Family Browser (UCSC)COX20
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerCOX20 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)COX20
dbVarCOX20
ClinVarCOX20
1000_GenomesCOX20 
Exome Variant ServerCOX20
ExAC (Exome Aggregation Consortium)COX20 (select the gene name)
Genetic variants : HAPMAP116228
Genomic Variants (DGV)COX20 [DGVbeta]
DECIPHERCOX20 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisCOX20 
Mutations
ICGC Data PortalCOX20 
TCGA Data PortalCOX20 
Broad Tumor PortalCOX20
OASIS PortalCOX20 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICCOX20  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDCOX20
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
LOVD (Leiden Open Variation Database)MSeqDR-LSDB Mitochondrial Disease Locus Specific Database
BioMutasearch COX20
DgiDB (Drug Gene Interaction Database)COX20
DoCM (Curated mutations)COX20 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)COX20 (select a term)
intoGenCOX20
Cancer3DCOX20(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM220110    614698   
Orphanet19799   
MedgenCOX20
Genetic Testing Registry COX20
NextProtQ5RI15 [Medical]
TSGene116228
GENETestsCOX20
Target ValidationCOX20
Huge Navigator COX20 [HugePedia]
snp3D : Map Gene to Disease116228
BioCentury BCIQCOX20
ClinGenCOX20
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD116228
Chemical/Pharm GKB GenePA134976890
Clinical trialCOX20
Miscellaneous
canSAR (ICR)COX20 (select the gene name)
Probes
Litterature
PubMed15 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineCOX20
EVEXCOX20
GoPubMedCOX20
iHOPCOX20
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Sep 18 13:05:16 CEST 2017

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