Atlas of Genetics and Cytogenetics in Oncology and Haematology


Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

X Y 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 NA

COX3 (cytochrome c oxidase III)

Identity

Other aliasCOIII
MTCO3
HGNC (Hugo) MT-CO3
LocusID (NCBI) 4514
Atlas_Id 55923
Location -  [Link to chromosome band ]
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute


External links

Nomenclature
HGNC (Hugo)MT-CO3   7422
Cards
Entrez_Gene (NCBI)COX3  4514  cytochrome c oxidase III
AliasesCOIII; MTCO3
GeneCards (Weizmann)COX3
Ensembl hg19 (Hinxton) [Gene_View]
Ensembl hg38 (Hinxton) [Gene_View]   [Sequence]  - [Contig_View]  COX3 [Vega]
TCGA cBioPortalCOX3
AceView (NCBI)COX3
Genatlas (Paris)COX3
WikiGenes4514
SOURCE (Princeton)COX3
Genetics Home Reference (NIH)COX3
Genomic and cartography
GoldenPath hg38 (UCSC)COX3  -  
GoldenPath hg19 (UCSC)COX3  -  
EnsemblCOX3 - [CytoView hg19]  COX3 - [CytoView hg38]
Mapping of homologs : NCBICOX3 [Mapview hg19]  COX3 [Mapview hg38]
OMIM516050   535000   540000   
Gene and transcription
Genbank (Entrez)-
RefSeq transcript (Entrez)
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)COX3
Gene ExpressionCOX3 [ NCBI-GEO ]   COX3 [ EBI - ARRAY_EXPRESS ]   COX3 [ SEEK ]   COX3 [ MEM ]
Gene Expression Viewer (FireBrowse)COX3 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)4514
GTEX Portal (Tissue expression)COX3
Protein : pattern, domain, 3D structure
UniProt/SwissProtP00414   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtP00414  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProP00414
Splice isoforms : SwissVarP00414
PhosPhoSitePlusP00414
Domaine pattern : Prosite (Expaxy)COX3 (PS50253)   
Domains : Interpro (EBI)Cyt_c/ubiquinol_Oxase_su3    Cyt_c_oxase_su3_dom    Cyt_c_oxidase-like_su3    Cyt_c_oxidase_su3_a-hlx   
Domain families : Pfam (Sanger)COX3 (PF00510)   
Domain families : Pfam (NCBI)pfam00510   
Conserved Domain (NCBI)COX3
DMDM Disease mutations4514
Blocks (Seattle)COX3
SuperfamilyP00414
Peptide AtlasP00414
IPIIPI00017533   
Protein Interaction databases
DIP (DOE-UCLA)P00414
IntAct (EBI)P00414
BioGRIDCOX3
STRING (EMBL)COX3
ZODIACCOX3
Ontologies - Pathways
QuickGOP00414
Ontology : AmiGOcytochrome-c oxidase activity  protein binding  mitochondrial inner membrane  mitochondrial electron transport, cytochrome c to oxygen  respiratory chain complex IV assembly  integral component of membrane  respiratory chain complex IV  hydrogen ion transmembrane transport  
Ontology : EGO-EBIcytochrome-c oxidase activity  protein binding  mitochondrial inner membrane  mitochondrial electron transport, cytochrome c to oxygen  respiratory chain complex IV assembly  integral component of membrane  respiratory chain complex IV  hydrogen ion transmembrane transport  
NDEx NetworkCOX3
Atlas of Cancer Signalling NetworkCOX3
Wikipedia pathwaysCOX3
Orthology - Evolution
OrthoDB4514
Phylogenetic Trees/Animal Genes : TreeFamMT-CO3
HOVERGENP00414
HOGENOMP00414
Homologs : HomoloGeneCOX3
Homology/Alignments : Family Browser (UCSC)COX3
Gene fusions - Rearrangements
Fusion : QuiverCOX3
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerCOX3 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)COX3
dbVarCOX3
ClinVarCOX3
1000_GenomesCOX3 
Exome Variant ServerCOX3
Genetic variants : HAPMAP4514
Genomic Variants (DGV)COX3 [DGVbeta]
DECIPHERCOX3 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisCOX3 
Mutations
ICGC Data PortalMT-CO3 
TCGA Data PortalMT-CO3 
Broad Tumor PortalMT-CO3
OASIS PortalMT-CO3 [ Somatic mutations - Copy number]
Mutations and Diseases : HGMDMT-CO3
BioMutasearch COX3
DgiDB (Drug Gene Interaction Database)COX3
DoCM (Curated mutations)COX3 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)COX3 (select a term)
intoGenCOX3
Cancer3DCOX3(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM516050    535000    540000   
Orphanet
DisGeNETCOX3
MedgenCOX3
Genetic Testing Registry COX3
NextProtP00414 [Medical]
TSGene4514
GENETestsCOX3
Target ValidationCOX3
Huge Navigator MT-CO3 [HugePedia]
snp3D : Map Gene to Disease4514
BioCentury BCIQCOX3
ClinGenCOX3
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD4514
Chemical/Pharm GKB GenePA31229
Clinical trialCOX3
Miscellaneous
canSAR (ICR)COX3 (select the gene name)
Probes
Litterature
PubMed32 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineCOX3
EVEXCOX3
GoPubMedCOX3
iHOPCOX3
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Fri Jun 22 16:20:34 CEST 2018

Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

For comments and suggestions or contributions, please contact us

jlhuret@AtlasGeneticsOncology.org.