Atlas of Genetics and Cytogenetics in Oncology and Haematology


Home   Genes   Leukemias   Solid Tumours   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

X Y 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 NA

COX6A2 (cytochrome c oxidase subunit 6A2)

Identity

Other namesCOX6AH
COXVIAH
HGNC (Hugo) COX6A2
LocusID (NCBI) 1339
Atlas_Id 40136
Location 16p11.2
Location_base_pair Starts at 31439052 and ends at 31439749 bp from pter ( according to hg19-Feb_2009)
Fusion genes
(updated 2016)
COX6A2 (16p11.2) / MYL3 (3p21.31)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)COX6A2   2279
Cards
Entrez_Gene (NCBI)COX6A2  1339  cytochrome c oxidase subunit 6A2
AliasesCOX6AH; COXVIAH
GeneCards (Weizmann)COX6A2
Ensembl hg19 (Hinxton)ENSG00000156885 [Gene_View]  chr16:31439052-31439749 [Contig_View]  COX6A2 [Vega]
Ensembl hg38 (Hinxton)ENSG00000156885 [Gene_View]  chr16:31439052-31439749 [Contig_View]  COX6A2 [Vega]
ICGC DataPortalENSG00000156885
TCGA cBioPortalCOX6A2
AceView (NCBI)COX6A2
Genatlas (Paris)COX6A2
WikiGenes1339
SOURCE (Princeton)COX6A2
Genomic and cartography
GoldenPath hg19 (UCSC)COX6A2  -     chr16:31439052-31439749 -  16p11.2   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)COX6A2  -     16p11.2   [Description]    (hg38-Dec_2013)
EnsemblCOX6A2 - 16p11.2 [CytoView hg19]  COX6A2 - 16p11.2 [CytoView hg38]
Mapping of homologs : NCBICOX6A2 [Mapview hg19]  COX6A2 [Mapview hg38]
OMIM602009   
Gene and transcription
Genbank (Entrez)BC029818 BP319904 DQ890561 DQ893723 F27891
RefSeq transcript (Entrez)NM_005205
RefSeq genomic (Entrez)NC_000016 NC_018927 NT_187260 NW_004929400
Consensus coding sequences : CCDS (NCBI)COX6A2
Cluster EST : UnigeneHs.250760 [ NCBI ]
CGAP (NCI)Hs.250760
Alternative Splicing GalleryENSG00000156885
Gene ExpressionCOX6A2 [ NCBI-GEO ]   COX6A2 [ EBI - ARRAY_EXPRESS ]   COX6A2 [ SEEK ]   COX6A2 [ MEM ]
Gene Expression Viewer (FireBrowse)COX6A2 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)1339
GTEX Portal (Tissue expression)COX6A2
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ02221 (Uniprot)
NextProtQ02221  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ02221
Splice isoforms : SwissVarQ02221 (Swissvar)
PhosPhoSitePlusQ02221
Domaine pattern : Prosite (Expaxy)COX6A (PS01329)   
Domains : Interpro (EBI)Cyt_c_oxidase_su6a    Cyt_c_oxidase_su6a_CS   
Domain families : Pfam (Sanger)COX6A (PF02046)   
Domain families : Pfam (NCBI)pfam02046   
Domain structure : Prodom (Prabi Lyon)Cyt_c_oxidase_su6a (PD006036)   
DMDM Disease mutations1339
Blocks (Seattle)COX6A2
SuperfamilyQ02221
Human Protein AtlasENSG00000156885
Peptide AtlasQ02221
HPRD03598
IPIIPI00293876   
Protein Interaction databases
DIP (DOE-UCLA)Q02221
IntAct (EBI)Q02221
FunCoupENSG00000156885
BioGRIDCOX6A2
STRING (EMBL)COX6A2
ZODIACCOX6A2
Ontologies - Pathways
QuickGOQ02221
Ontology : AmiGOcytochrome-c oxidase activity  mitochondrial respiratory chain complex IV  generation of precursor metabolites and energy  hydrogen ion transmembrane transport  
Ontology : EGO-EBIcytochrome-c oxidase activity  mitochondrial respiratory chain complex IV  generation of precursor metabolites and energy  hydrogen ion transmembrane transport  
Pathways : KEGGOxidative phosphorylation    Cardiac muscle contraction    Non-alcoholic fatty liver disease (NAFLD)    Alzheimer's disease    Parkinson's disease    Huntington's disease   
NDEx Network
Atlas of Cancer Signalling NetworkCOX6A2
Wikipedia pathwaysCOX6A2
Orthology - Evolution
OrthoDB1339
GeneTree (enSembl)ENSG00000156885
Phylogenetic Trees/Animal Genes : TreeFamCOX6A2
Homologs : HomoloGeneCOX6A2
Homology/Alignments : Family Browser (UCSC)COX6A2
Gene fusions - Rearrangements
Polymorphisms : SNP, variants
NCBI Variation ViewerCOX6A2 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)COX6A2
dbVarCOX6A2
ClinVarCOX6A2
1000_GenomesCOX6A2 
Exome Variant ServerCOX6A2
ExAC (Exome Aggregation Consortium)COX6A2 (select the gene name)
Genetic variants : HAPMAP1339
Genomic Variants (DGV)COX6A2 [DGVbeta]
Mutations
ICGC Data PortalCOX6A2 
TCGA Data PortalCOX6A2 
Broad Tumor PortalCOX6A2
OASIS PortalCOX6A2 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICCOX6A2 
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
LOVD (Leiden Open Variation Database)MSeqDR-LSDB Mitochondrial Disease Locus Specific Database
BioMutasearch COX6A2
DgiDB (Drug Gene Interaction Database)COX6A2
DoCM (Curated mutations)COX6A2 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)COX6A2 (select a term)
intoGenCOX6A2
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] 
Diseases
DECIPHER (Syndromes)16:31439052-31439749  ENSG00000156885
CONAN: Copy Number AnalysisCOX6A2 
Mutations and Diseases : HGMDCOX6A2
OMIM602009   
MedgenCOX6A2
Genetic Testing Registry COX6A2
NextProtQ02221 [Medical]
TSGene1339
GENETestsCOX6A2
Huge Navigator COX6A2 [HugePedia]
snp3D : Map Gene to Disease1339
BioCentury BCIQCOX6A2
ClinGenCOX6A2
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD1339
Chemical/Pharm GKB GenePA26796
Clinical trialCOX6A2
Miscellaneous
canSAR (ICR)COX6A2 (select the gene name)
Probes
Litterature
PubMed11 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineCOX6A2
EVEXCOX6A2
GoPubMedCOX6A2
iHOPCOX6A2
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Sat May 28 10:58:41 CEST 2016

Home   Genes   Leukemias   Solid Tumours   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

For comments and suggestions or contributions, please contact us

jlhuret@AtlasGeneticsOncology.org.