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COX6A2 (cytochrome c oxidase subunit VIa polypeptide 2)

Identity

Other namesCOX6AH
COXVIAH
HGNC (Hugo) COX6A2
LocusID (NCBI) 1339
Location 16p11.2
Location_base_pair Starts at 31439052 and ends at 31439749 bp from pter ( according to hg19-Feb_2009)
Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 

External links

Nomenclature
HGNC (Hugo)COX6A2   2279
Cards
Entrez_Gene (NCBI)COX6A2  1339  cytochrome c oxidase subunit VIa polypeptide 2
GeneCards (Weizmann)COX6A2
Ensembl (Hinxton)ENSG00000156885 [Gene_View]  chr16:31439052-31439749 [Contig_View]  COX6A2 [Vega]
ICGC DataPortalENSG00000156885
AceView (NCBI)COX6A2
Genatlas (Paris)COX6A2
WikiGenes1339
SOURCE (Princeton)NM_005205
Genomic and cartography
GoldenPath (UCSC)COX6A2  -  16p11.2   chr16:31439052-31439749 -  16p11.2   [Description]    (hg19-Feb_2009)
EnsemblCOX6A2 - 16p11.2 [CytoView]
Mapping of homologs : NCBICOX6A2 [Mapview]
OMIM602009   
Gene and transcription
Genbank (Entrez)BC029818 BP319904 DQ890561 DQ893723 F27891
RefSeq transcript (Entrez)NM_005205
RefSeq genomic (Entrez)AC_000148 NC_000016 NC_018927 NT_187260 NW_001838236 NW_004929400
Consensus coding sequences : CCDS (NCBI)COX6A2
Cluster EST : UnigeneHs.250760 [ NCBI ]
CGAP (NCI)Hs.250760
Alternative Splicing : Fast-db (Paris)GSHG0011795
Alternative Splicing GalleryENSG00000156885
Gene ExpressionCOX6A2 [ NCBI-GEO ]     COX6A2 [ SEEK ]   COX6A2 [ MEM ]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ02221 (Uniprot)
NextProtQ02221  [Medical]
With graphics : InterProQ02221
Splice isoforms : SwissVarQ02221 (Swissvar)
Domaine pattern : Prosite (Expaxy)COX6A (PS01329)   
Domains : Interpro (EBI)Cyt_c_oxidase_su6a    Cyt_c_oxidase_su6a_CS   
Related proteins : CluSTrQ02221
Domain families : Pfam (Sanger)COX6A (PF02046)   
Domain families : Pfam (NCBI)pfam02046   
Domain structure : Prodom (Prabi Lyon)Cyt_c_oxidase_su6a (PD006036)   
DMDM Disease mutations1339
Blocks (Seattle)Q02221
Human Protein AtlasENSG00000156885
Peptide AtlasQ02221
HPRD03598
IPIIPI00293876   
Protein Interaction databases
DIP (DOE-UCLA)Q02221
IntAct (EBI)Q02221
FunCoupENSG00000156885
BioGRIDCOX6A2
InParanoidQ02221
Interologous Interaction database Q02221
IntegromeDBCOX6A2
STRING (EMBL)COX6A2
Ontologies - Pathways
Ontology : AmiGOcytochrome-c oxidase activity  mitochondrial respiratory chain complex IV  generation of precursor metabolites and energy  hydrogen ion transmembrane transport  
Ontology : EGO-EBIcytochrome-c oxidase activity  mitochondrial respiratory chain complex IV  generation of precursor metabolites and energy  hydrogen ion transmembrane transport  
Pathways : KEGGOxidative phosphorylation    Cardiac muscle contraction    Non-alcoholic fatty liver disease (NAFLD)    Alzheimer's disease    Parkinson's disease    Huntington's disease   
Protein Interaction DatabaseCOX6A2
Wikipedia pathwaysCOX6A2
Gene fusion - rearrangments
Polymorphisms : SNP, mutations, diseases
SNP Single Nucleotide Polymorphism (NCBI)COX6A2
SNP (GeneSNP Utah)COX6A2
SNP : HGBaseCOX6A2
Genetic variants : HAPMAPCOX6A2
1000_GenomesCOX6A2 
ICGC programENSG00000156885 
CONAN: Copy Number AnalysisCOX6A2 
Somatic Mutations in Cancer : COSMICCOX6A2 
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
LOVD (Leiden Open Variation Database)MSeqDR-LSDB Mitochondrial Disease Locus Specific Database
Mutations and Diseases : HGMDCOX6A2
OMIM602009   
MedgenCOX6A2
GENETestsCOX6A2
Disease Genetic AssociationCOX6A2
Huge Navigator COX6A2 [HugePedia]  COX6A2 [HugeCancerGEM]
Genomic VariantsCOX6A2  COX6A2 [DGVbeta]
Exome VariantCOX6A2
dbVarCOX6A2
ClinVarCOX6A2
snp3D : Map Gene to Disease1339
General knowledge
Homologs : HomoloGeneCOX6A2
Homology/Alignments : Family Browser (UCSC)COX6A2
Phylogenetic Trees/Animal Genes : TreeFamCOX6A2
Chemical/Protein Interactions : CTD1339
Chemical/Pharm GKB GenePA26796
Clinical trialCOX6A2
Cancer Resource (Charite)ENSG00000156885
Other databases
Probes
Litterature
PubMed12 Pubmed reference(s) in Entrez
CoreMineCOX6A2
iHOPCOX6A2
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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Contributor(s)

Written09-2002Dessen P, Le Minor S
Updated12-2013Dessen P

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Mon Oct 13 12:40:04 CEST 2014

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