Atlas of Genetics and Cytogenetics in Oncology and Haematology


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COX6B1 (cytochrome c oxidase subunit VIb polypeptide 1 (ubiquitous))

Identity

Other namesCOX6B
COXG
COXVIb1
HGNC (Hugo) COX6B1
LocusID (NCBI) 1340
Location 19q13.12
Location_base_pair Starts at 36139125 and ends at 36149686 bp from pter ( according to hg19-Feb_2009)
Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 

External links

Nomenclature
HGNC (Hugo)COX6B1   2280
Cards
Entrez_Gene (NCBI)COX6B1  1340  cytochrome c oxidase subunit VIb polypeptide 1 (ubiquitous)
GeneCards (Weizmann)COX6B1
Ensembl (Hinxton)ENSG00000126267 [Gene_View]  chr19:36139125-36149686 [Contig_View]  COX6B1 [Vega]
ICGC DataPortalENSG00000126267
cBioPortalCOX6B1
AceView (NCBI)COX6B1
Genatlas (Paris)COX6B1
WikiGenes1340
SOURCE (Princeton)NM_001863
Genomic and cartography
GoldenPath (UCSC)COX6B1  -  19q13.12   chr19:36139125-36149686 +  19q13.12   [Description]    (hg19-Feb_2009)
EnsemblCOX6B1 - 19q13.12 [CytoView]
Mapping of homologs : NCBICOX6B1 [Mapview]
OMIM124089   220110   
Gene and transcription
Genbank (Entrez)AK312140 BC001015 BC002478 BT006945 CR456789
RefSeq transcript (Entrez)NM_001863
RefSeq genomic (Entrez)AC_000151 NC_000019 NC_018930 NG_012193 NT_011109 NW_001838494 NW_004929415
Consensus coding sequences : CCDS (NCBI)COX6B1
Cluster EST : UnigeneHs.431668 [ NCBI ]
CGAP (NCI)Hs.431668
Alternative Splicing : Fast-db (Paris)GSHG0014838
Alternative Splicing GalleryENSG00000126267
Gene ExpressionCOX6B1 [ NCBI-GEO ]     COX6B1 [ SEEK ]   COX6B1 [ MEM ]
Protein : pattern, domain, 3D structure
UniProt/SwissProtP14854 (Uniprot)
NextProtP14854  [Medical]
With graphics : InterProP14854
Splice isoforms : SwissVarP14854 (Swissvar)
Domains : Interpro (EBI)Cyt_c_oxidase_su6B [organisation]  
Related proteins : CluSTrP14854
Domain families : Pfam (Sanger)COX6B (PF02297)   
Domain families : Pfam (NCBI)pfam02297   
DMDM Disease mutations1340
Blocks (Seattle)P14854
Human Protein AtlasENSG00000126267 [gene] [tissue] [antibody] [cell] [cancer]
Peptide AtlasP14854
HPRD00493
IPIIPI00797738   
Protein Interaction databases
DIP (DOE-UCLA)P14854
IntAct (EBI)P14854
FunCoupENSG00000126267
BioGRIDCOX6B1
InParanoidP14854
Interologous Interaction database P14854
IntegromeDBCOX6B1
STRING (EMBL)COX6B1
Ontologies - Pathways
Ontology : AmiGOcytochrome-c oxidase activity  mitochondrion  mitochondrial inner membrane  mitochondrial intermembrane space  substantia nigra development  respiratory electron transport chain  cellular metabolic process  small molecule metabolic process  hydrogen ion transmembrane transport  hydrogen ion transmembrane transport  
Ontology : EGO-EBIcytochrome-c oxidase activity  mitochondrion  mitochondrial inner membrane  mitochondrial intermembrane space  substantia nigra development  respiratory electron transport chain  cellular metabolic process  small molecule metabolic process  hydrogen ion transmembrane transport  hydrogen ion transmembrane transport  
Pathways : KEGGOxidative phosphorylation    Cardiac muscle contraction    Non-alcoholic fatty liver disease (NAFLD)    Alzheimer's disease    Parkinson's disease    Huntington's disease   
Protein Interaction DatabaseCOX6B1
Wikipedia pathwaysCOX6B1
Gene fusion - rearrangments
Polymorphisms : SNP, mutations, diseases
SNP Single Nucleotide Polymorphism (NCBI)COX6B1
snp3D : Map Gene to Disease1340
SNP (GeneSNP Utah)COX6B1
SNP : HGBaseCOX6B1
Genetic variants : HAPMAPCOX6B1
Exome VariantCOX6B1
1000_GenomesCOX6B1 
ICGC programENSG00000126267 
Somatic Mutations in Cancer : COSMICCOX6B1 
CONAN: Copy Number AnalysisCOX6B1 
Mutations and Diseases : HGMDCOX6B1
Mutations and Diseases : intOGenCOX6B1
Genomic VariantsCOX6B1  COX6B1 [DGVbeta]
dbVarCOX6B1
ClinVarCOX6B1
Pred. of missensesPolyPhen-2  SIFT(SG)  SIFT(JCVI)  Align-GVGD  MutAssessor  Mutanalyser  
Pred. splicesGeneSplicer  Human Splicing Finder  MaxEntScan  
Diseases
OMIM124089    220110   
MedgenCOX6B1
GENETestsCOX6B1
Disease Genetic AssociationCOX6B1
Huge Navigator COX6B1 [HugePedia]  COX6B1 [HugeCancerGEM]
General knowledge
Homologs : HomoloGeneCOX6B1
Homology/Alignments : Family Browser (UCSC)COX6B1
Phylogenetic Trees/Animal Genes : TreeFamCOX6B1
Chemical/Protein Interactions : CTD1340
Chemical/Pharm GKB GenePA26797
Clinical trialCOX6B1
Cancer Resource (Charite)ENSG00000126267
Other databases
Probes
Litterature
PubMed29 Pubmed reference(s) in Entrez
CoreMineCOX6B1
iHOPCOX6B1
OncoSearchCOX6B1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

Contributor(s)

Written09-2002Dessen P, Le Minor S
Updated12-2013Dessen P

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Tue Aug 26 16:42:59 CEST 2014

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