Atlas of Genetics and Cytogenetics in Oncology and Haematology


Home   Genes   Leukemias   Solid Tumours   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

X Y 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 NA

COX6B2 (cytochrome c oxidase subunit 6B2)

Identity

Alias_namescytochrome c oxidase subunit VIb polypeptide 2 (testis)
Alias_symbol (synonym)COXVIB2
FLJ32865
CT59
Other alias
HGNC (Hugo) COX6B2
LocusID (NCBI) 125965
Atlas_Id 47386
Location 19q13.42  [Link to chromosome band 19q13]
Location_base_pair Starts at 55861070 and ends at 55866182 bp from pter ( according to hg19-Feb_2009)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)COX6B2   24380
Cards
Entrez_Gene (NCBI)COX6B2  125965  cytochrome c oxidase subunit 6B2
AliasesCOXVIB2; CT59
GeneCards (Weizmann)COX6B2
Ensembl hg19 (Hinxton)ENSG00000160471 [Gene_View]  chr19:55861070-55866182 [Contig_View]  COX6B2 [Vega]
Ensembl hg38 (Hinxton)ENSG00000160471 [Gene_View]  chr19:55861070-55866182 [Contig_View]  COX6B2 [Vega]
ICGC DataPortalENSG00000160471
TCGA cBioPortalCOX6B2
AceView (NCBI)COX6B2
Genatlas (Paris)COX6B2
WikiGenes125965
SOURCE (Princeton)COX6B2
Genetics Home Reference (NIH)COX6B2
Genomic and cartography
GoldenPath hg19 (UCSC)COX6B2  -     chr19:55861070-55866182 -  19q13.42   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)COX6B2  -     19q13.42   [Description]    (hg38-Dec_2013)
EnsemblCOX6B2 - 19q13.42 [CytoView hg19]  COX6B2 - 19q13.42 [CytoView hg38]
Mapping of homologs : NCBICOX6B2 [Mapview hg19]  COX6B2 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AK057427 AY152398 BC026123 BC064548 BC100899
RefSeq transcript (Entrez)NM_144613
RefSeq genomic (Entrez)NC_000019 NC_018930 NT_011109 NW_004929415
Consensus coding sequences : CCDS (NCBI)COX6B2
Cluster EST : UnigeneHs.550544 [ NCBI ]
CGAP (NCI)Hs.550544
Alternative Splicing GalleryENSG00000160471
Gene ExpressionCOX6B2 [ NCBI-GEO ]   COX6B2 [ EBI - ARRAY_EXPRESS ]   COX6B2 [ SEEK ]   COX6B2 [ MEM ]
Gene Expression Viewer (FireBrowse)COX6B2 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)125965
GTEX Portal (Tissue expression)COX6B2
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ6YFQ2   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ6YFQ2  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ6YFQ2
Splice isoforms : SwissVarQ6YFQ2
PhosPhoSitePlusQ6YFQ2
Domains : Interpro (EBI)Cyt_c_oxidase_su6B   
Domain families : Pfam (Sanger)COX6B (PF02297)   
Domain families : Pfam (NCBI)pfam02297   
Conserved Domain (NCBI)COX6B2
DMDM Disease mutations125965
Blocks (Seattle)COX6B2
SuperfamilyQ6YFQ2
Human Protein AtlasENSG00000160471
Peptide AtlasQ6YFQ2
HPRD13088
IPIIPI00375326   
Protein Interaction databases
DIP (DOE-UCLA)Q6YFQ2
IntAct (EBI)Q6YFQ2
FunCoupENSG00000160471
BioGRIDCOX6B2
STRING (EMBL)COX6B2
ZODIACCOX6B2
Ontologies - Pathways
QuickGOQ6YFQ2
Ontology : AmiGOcytochrome-c oxidase activity  protein binding  mitochondrial intermembrane space  mitochondrial crista  hydrogen ion transmembrane transport  
Ontology : EGO-EBIcytochrome-c oxidase activity  protein binding  mitochondrial intermembrane space  mitochondrial crista  hydrogen ion transmembrane transport  
Pathways : KEGGOxidative phosphorylation    Cardiac muscle contraction    Non-alcoholic fatty liver disease (NAFLD)    Alzheimer's disease    Parkinson's disease    Huntington's disease   
NDEx NetworkCOX6B2
Atlas of Cancer Signalling NetworkCOX6B2
Wikipedia pathwaysCOX6B2
Orthology - Evolution
OrthoDB125965
GeneTree (enSembl)ENSG00000160471
Phylogenetic Trees/Animal Genes : TreeFamCOX6B2
HOVERGENQ6YFQ2
HOGENOMQ6YFQ2
Homologs : HomoloGeneCOX6B2
Homology/Alignments : Family Browser (UCSC)COX6B2
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerCOX6B2 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)COX6B2
dbVarCOX6B2
ClinVarCOX6B2
1000_GenomesCOX6B2 
Exome Variant ServerCOX6B2
ExAC (Exome Aggregation Consortium)COX6B2 (select the gene name)
Genetic variants : HAPMAP125965
Genomic Variants (DGV)COX6B2 [DGVbeta]
DECIPHER (Syndromes)19:55861070-55866182  ENSG00000160471
CONAN: Copy Number AnalysisCOX6B2 
Mutations
ICGC Data PortalCOX6B2 
TCGA Data PortalCOX6B2 
Broad Tumor PortalCOX6B2
OASIS PortalCOX6B2 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICCOX6B2  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDCOX6B2
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
LOVD (Leiden Open Variation Database)MSeqDR-LSDB Mitochondrial Disease Locus Specific Database
BioMutasearch COX6B2
DgiDB (Drug Gene Interaction Database)COX6B2
DoCM (Curated mutations)COX6B2 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)COX6B2 (select a term)
intoGenCOX6B2
Cancer3DCOX6B2(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenCOX6B2
Genetic Testing Registry COX6B2
NextProtQ6YFQ2 [Medical]
TSGene125965
GENETestsCOX6B2
Huge Navigator COX6B2 [HugePedia]
snp3D : Map Gene to Disease125965
BioCentury BCIQCOX6B2
ClinGenCOX6B2
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD125965
Chemical/Pharm GKB GenePA134869389
Clinical trialCOX6B2
Miscellaneous
canSAR (ICR)COX6B2 (select the gene name)
Probes
Litterature
PubMed9 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineCOX6B2
EVEXCOX6B2
GoPubMedCOX6B2
iHOPCOX6B2
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Thu Mar 30 14:57:23 CEST 2017

Home   Genes   Leukemias   Solid Tumours   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

For comments and suggestions or contributions, please contact us

jlhuret@AtlasGeneticsOncology.org.