Atlas of Genetics and Cytogenetics in Oncology and Haematology


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COX7A1 (cytochrome c oxidase subunit 7A1)

Identity

Alias_namesCOX7A
cytochrome c oxidase subunit VIIa polypeptide 1 (muscle)
Alias_symbol (synonym)COX7AH
Other aliasCOX7AM
HGNC (Hugo) COX7A1
LocusID (NCBI) 1346
Atlas_Id 46994
Location 19q13.12  [Link to chromosome band 19q13]
Location_base_pair Starts at 36150922 and ends at 36152869 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
COX7A1 (19q13.12) / POSTN (13q13.3)COX7A1 (19q13.12) / TOP2B (3p24.2)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)COX7A1   2287
Cards
Entrez_Gene (NCBI)COX7A1  1346  cytochrome c oxidase subunit 7A1
AliasesCOX7A; COX7AH; COX7AM
GeneCards (Weizmann)COX7A1
Ensembl hg19 (Hinxton)ENSG00000161281 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000161281 [Gene_View]  chr19:36150922-36152869 [Contig_View]  COX7A1 [Vega]
ICGC DataPortalENSG00000161281
TCGA cBioPortalCOX7A1
AceView (NCBI)COX7A1
Genatlas (Paris)COX7A1
WikiGenes1346
SOURCE (Princeton)COX7A1
Genetics Home Reference (NIH)COX7A1
Genomic and cartography
GoldenPath hg38 (UCSC)COX7A1  -     chr19:36150922-36152869 -  19q13.12   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)COX7A1  -     19q13.12   [Description]    (hg19-Feb_2009)
EnsemblCOX7A1 - 19q13.12 [CytoView hg19]  COX7A1 - 19q13.12 [CytoView hg38]
Mapping of homologs : NCBICOX7A1 [Mapview hg19]  COX7A1 [Mapview hg38]
OMIM123995   
Gene and transcription
Genbank (Entrez)AK312091 BC002757 BT006924 CR542120 DQ890635
RefSeq transcript (Entrez)NM_001864
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)COX7A1
Cluster EST : UnigeneHs.421621 [ NCBI ]
CGAP (NCI)Hs.421621
Alternative Splicing GalleryENSG00000161281
Gene ExpressionCOX7A1 [ NCBI-GEO ]   COX7A1 [ EBI - ARRAY_EXPRESS ]   COX7A1 [ SEEK ]   COX7A1 [ MEM ]
Gene Expression Viewer (FireBrowse)COX7A1 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)1346
GTEX Portal (Tissue expression)COX7A1
Protein : pattern, domain, 3D structure
UniProt/SwissProtP24310   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtP24310  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProP24310
Splice isoforms : SwissVarP24310
PhosPhoSitePlusP24310
Domains : Interpro (EBI)Cyt_c_oxidase_su7a   
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)COX7A1
DMDM Disease mutations1346
Blocks (Seattle)COX7A1
SuperfamilyP24310
Human Protein AtlasENSG00000161281
Peptide AtlasP24310
HPRD00481
IPIIPI00306720   IPI00796142   
Protein Interaction databases
DIP (DOE-UCLA)P24310
IntAct (EBI)P24310
FunCoupENSG00000161281
BioGRIDCOX7A1
STRING (EMBL)COX7A1
ZODIACCOX7A1
Ontologies - Pathways
QuickGOP24310
Ontology : AmiGOcytochrome-c oxidase activity  mitochondrion  mitochondrial respiratory chain  generation of precursor metabolites and energy  integral component of membrane  hydrogen ion transmembrane transport  
Ontology : EGO-EBIcytochrome-c oxidase activity  mitochondrion  mitochondrial respiratory chain  generation of precursor metabolites and energy  integral component of membrane  hydrogen ion transmembrane transport  
Pathways : KEGGOxidative phosphorylation    Cardiac muscle contraction    Non-alcoholic fatty liver disease (NAFLD)    Alzheimer's disease    Parkinson's disease    Huntington's disease   
NDEx NetworkCOX7A1
Atlas of Cancer Signalling NetworkCOX7A1
Wikipedia pathwaysCOX7A1
Orthology - Evolution
OrthoDB1346
GeneTree (enSembl)ENSG00000161281
Phylogenetic Trees/Animal Genes : TreeFamCOX7A1
HOVERGENP24310
HOGENOMP24310
Homologs : HomoloGeneCOX7A1
Homology/Alignments : Family Browser (UCSC)COX7A1
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerCOX7A1 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)COX7A1
dbVarCOX7A1
ClinVarCOX7A1
1000_GenomesCOX7A1 
Exome Variant ServerCOX7A1
ExAC (Exome Aggregation Consortium)COX7A1 (select the gene name)
Genetic variants : HAPMAP1346
Genomic Variants (DGV)COX7A1 [DGVbeta]
DECIPHERCOX7A1 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisCOX7A1 
Mutations
ICGC Data PortalCOX7A1 
TCGA Data PortalCOX7A1 
Broad Tumor PortalCOX7A1
OASIS PortalCOX7A1 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICCOX7A1  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDCOX7A1
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
LOVD (Leiden Open Variation Database)MSeqDR-LSDB Mitochondrial Disease Locus Specific Database
BioMutasearch COX7A1
DgiDB (Drug Gene Interaction Database)COX7A1
DoCM (Curated mutations)COX7A1 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)COX7A1 (select a term)
intoGenCOX7A1
Cancer3DCOX7A1(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM123995   
Orphanet
MedgenCOX7A1
Genetic Testing Registry COX7A1
NextProtP24310 [Medical]
TSGene1346
GENETestsCOX7A1
Huge Navigator COX7A1 [HugePedia]
snp3D : Map Gene to Disease1346
BioCentury BCIQCOX7A1
ClinGenCOX7A1
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD1346
Chemical/Pharm GKB GenePA26805
Clinical trialCOX7A1
Miscellaneous
canSAR (ICR)COX7A1 (select the gene name)
Probes
Litterature
PubMed22 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineCOX7A1
EVEXCOX7A1
GoPubMedCOX7A1
iHOPCOX7A1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Fri May 19 12:11:33 CEST 2017

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