Atlas of Genetics and Cytogenetics in Oncology and Haematology


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COX7A2 (cytochrome c oxidase subunit 7A2)

Identity

Alias (NCBI)COX7AL
COX7AL1
COXVIIAL
COXVIIa-L
VIIAL
HGNC (Hugo) COX7A2
HGNC Alias symbCOXVIIa-L
COX7AL
HGNC Previous namecytochrome c oxidase subunit VIIa polypeptide 2 (liver)
LocusID (NCBI) 1347
Atlas_Id 46795
Location 6q14.1  [Link to chromosome band 6q14]
Location_base_pair Starts at 75237675 and ends at 75250298 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
CASK (Xp11.4) / COX7A2 (6q14.1)COX7A2 (6q14.1) / TRBV20-1 ()

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 



External links

Nomenclature
HGNC (Hugo)COX7A2   2288
Cards
Entrez_Gene (NCBI)COX7A2    cytochrome c oxidase subunit 7A2
AliasesCOX7AL; COX7AL1; COXVIIAL; COXVIIa-L; 
VIIAL
GeneCards (Weizmann)COX7A2
Ensembl hg19 (Hinxton)ENSG00000112695 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000112695 [Gene_View]  ENSG00000112695 [Sequence]  chr6:75237675-75250298 [Contig_View]  COX7A2 [Vega]
ICGC DataPortalENSG00000112695
TCGA cBioPortalCOX7A2
AceView (NCBI)COX7A2
Genatlas (Paris)COX7A2
SOURCE (Princeton)COX7A2
Genetics Home Reference (NIH)COX7A2
Genomic and cartography
GoldenPath hg38 (UCSC)COX7A2  -     chr6:75237675-75250298 -  6q14.1   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)COX7A2  -     6q14.1   [Description]    (hg19-Feb_2009)
GoldenPathCOX7A2 - 6q14.1 [CytoView hg19]  COX7A2 - 6q14.1 [CytoView hg38]
ImmunoBaseENSG00000112695
genome Data Viewer NCBICOX7A2 [Mapview hg19]  
OMIM123996   
Gene and transcription
Genbank (Entrez)AA978033 AK312154 BC100852 BC100853 BC100854
RefSeq transcript (Entrez)NM_001366292 NM_001366293 NM_001865
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)COX7A2
Alternative Splicing GalleryENSG00000112695
Gene ExpressionCOX7A2 [ NCBI-GEO ]   COX7A2 [ EBI - ARRAY_EXPRESS ]   COX7A2 [ SEEK ]   COX7A2 [ MEM ]
Gene Expression Viewer (FireBrowse)COX7A2 [ Firebrowse - Broad ]
GenevisibleExpression of COX7A2 in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)1347
GTEX Portal (Tissue expression)COX7A2
Human Protein AtlasENSG00000112695-COX7A2 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtP14406   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtP14406  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProP14406
Splice isoforms : SwissVarP14406
PhosPhoSitePlusP14406
Domains : Interpro (EBI)COX7a    Cyt_c_oxidase_su7a_sf    Cytc_oxidase_su7a_met   
Domain families : Pfam (Sanger)COX7a (PF02238)   
Domain families : Pfam (NCBI)pfam02238   
Conserved Domain (NCBI)COX7A2
Blocks (Seattle)COX7A2
PDB (RSDB)5Z62   
PDB Europe5Z62   
PDB (PDBSum)5Z62   
PDB (IMB)5Z62   
Structural Biology KnowledgeBase5Z62   
SCOP (Structural Classification of Proteins)5Z62   
CATH (Classification of proteins structures)5Z62   
SuperfamilyP14406
Human Protein Atlas [tissue]ENSG00000112695-COX7A2 [tissue]
Peptide AtlasP14406
HPRD00482
IPIIPI01014268   IPI00026570   IPI00964561   IPI00966054   IPI00964894   IPI00964261   IPI00967417   
Protein Interaction databases
DIP (DOE-UCLA)P14406
IntAct (EBI)P14406
BioGRIDCOX7A2
STRING (EMBL)COX7A2
ZODIACCOX7A2
Ontologies - Pathways
QuickGOP14406
Ontology : AmiGOregulation of oxidative phosphorylation  cytochrome-c oxidase activity  mitochondrial respiratory chain  oxidative phosphorylation  integral component of membrane  electron transport chain  mitochondrial respiratory chain supercomplex assembly  proton transmembrane transport  
Ontology : EGO-EBIregulation of oxidative phosphorylation  cytochrome-c oxidase activity  mitochondrial respiratory chain  oxidative phosphorylation  integral component of membrane  electron transport chain  mitochondrial respiratory chain supercomplex assembly  proton transmembrane transport  
Pathways : KEGGOxidative phosphorylation    Cardiac muscle contraction    Non-alcoholic fatty liver disease (NAFLD)    Alzheimer's disease    Parkinson's disease    Huntington's disease   
NDEx NetworkCOX7A2
Atlas of Cancer Signalling NetworkCOX7A2
Wikipedia pathwaysCOX7A2
Orthology - Evolution
OrthoDB1347
GeneTree (enSembl)ENSG00000112695
Phylogenetic Trees/Animal Genes : TreeFamCOX7A2
HOGENOMP14406
Homologs : HomoloGeneCOX7A2
Homology/Alignments : Family Browser (UCSC)COX7A2
Gene fusions - Rearrangements
Fusion : QuiverCOX7A2
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerCOX7A2 [hg38]
dbVarCOX7A2
ClinVarCOX7A2
MonarchCOX7A2
1000_GenomesCOX7A2 
Exome Variant ServerCOX7A2
GNOMAD BrowserENSG00000112695
Varsome BrowserCOX7A2
Genomic Variants (DGV)COX7A2 [DGVbeta]
DECIPHERCOX7A2 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisCOX7A2 
Mutations
ICGC Data PortalCOX7A2 
TCGA Data PortalCOX7A2 
Broad Tumor PortalCOX7A2
OASIS PortalCOX7A2 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICCOX7A2  [overview]  [genome browser]  [tissue]  [distribution]  
Somatic Mutations in Cancer : COSMIC3DCOX7A2
Mutations and Diseases : HGMDCOX7A2
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
LOVD (Leiden Open Variation Database)MSeqDR-LSDB Mitochondrial Disease Locus Specific Database
BioMutasearch COX7A2
DgiDB (Drug Gene Interaction Database)COX7A2
DoCM (Curated mutations)COX7A2 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)COX7A2 (select a term)
intoGenCOX7A2
Cancer3DCOX7A2(select the gene name)
Impact of mutations[PolyPhen2] [Provean] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM123996   
Orphanet
DisGeNETCOX7A2
MedgenCOX7A2
Genetic Testing Registry COX7A2
NextProtP14406 [Medical]
GENETestsCOX7A2
Target ValidationCOX7A2
Huge Navigator COX7A2 [HugePedia]
ClinGenCOX7A2
Clinical trials, drugs, therapy
MyCancerGenomeCOX7A2
Protein Interactions : CTD
Pharm GKB GenePA26806
Clinical trialCOX7A2
Miscellaneous
canSAR (ICR)COX7A2 (select the gene name)
HarmonizomeCOX7A2
DataMed IndexCOX7A2
Probes
Litterature
PubMed37 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
EVEXCOX7A2
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Sat Dec 5 20:44:20 CET 2020

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