Atlas of Genetics and Cytogenetics in Oncology and Haematology


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COX7A2 (cytochrome c oxidase subunit 7A2)

Identity

Alias_namescytochrome c oxidase subunit VIIa polypeptide 2 (liver)
Alias_symbol (synonym)COXVIIa-L
COX7AL
Other aliasCOX7AL1
COXVIIAL
VIIAL
HGNC (Hugo) COX7A2
LocusID (NCBI) 1347
Atlas_Id 46795
Location 6q14.1  [Link to chromosome band 6q14]
Location_base_pair Starts at 75237675 and ends at 75243928 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
CASK (Xp11.4) / COX7A2 (6q14.1)COX7A2 (6q14.1) / TRBV20-1 ()

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)COX7A2   2288
Cards
Entrez_Gene (NCBI)COX7A2  1347  cytochrome c oxidase subunit 7A2
AliasesCOX7AL; COX7AL1; COXVIIAL; COXVIIa-L; 
VIIAL
GeneCards (Weizmann)COX7A2
Ensembl hg19 (Hinxton)ENSG00000112695 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000112695 [Gene_View]  ENSG00000112695 [Sequence]  chr6:75237675-75243928 [Contig_View]  COX7A2 [Vega]
ICGC DataPortalENSG00000112695
TCGA cBioPortalCOX7A2
AceView (NCBI)COX7A2
Genatlas (Paris)COX7A2
WikiGenes1347
SOURCE (Princeton)COX7A2
Genetics Home Reference (NIH)COX7A2
Genomic and cartography
GoldenPath hg38 (UCSC)COX7A2  -     chr6:75237675-75243928 -  6q14.1   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)COX7A2  -     6q14.1   [Description]    (hg19-Feb_2009)
EnsemblCOX7A2 - 6q14.1 [CytoView hg19]  COX7A2 - 6q14.1 [CytoView hg38]
Mapping of homologs : NCBICOX7A2 [Mapview hg19]  COX7A2 [Mapview hg38]
OMIM123996   
Gene and transcription
Genbank (Entrez)AA978033 AK312154 BC100852 BC100853 BC100854
RefSeq transcript (Entrez)NM_001865
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)COX7A2
Cluster EST : UnigeneHs.70312 [ NCBI ]
CGAP (NCI)Hs.70312
Alternative Splicing GalleryENSG00000112695
Gene ExpressionCOX7A2 [ NCBI-GEO ]   COX7A2 [ EBI - ARRAY_EXPRESS ]   COX7A2 [ SEEK ]   COX7A2 [ MEM ]
Gene Expression Viewer (FireBrowse)COX7A2 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)1347
GTEX Portal (Tissue expression)COX7A2
Human Protein AtlasENSG00000112695-COX7A2 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtP14406   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtP14406  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProP14406
Splice isoforms : SwissVarP14406
PhosPhoSitePlusP14406
Domains : Interpro (EBI)Cyt_c_oxidase_su7a   
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)COX7A2
DMDM Disease mutations1347
Blocks (Seattle)COX7A2
SuperfamilyP14406
Human Protein Atlas [tissue]ENSG00000112695-COX7A2 [tissue]
Peptide AtlasP14406
HPRD00482
IPIIPI01014268   IPI00026570   IPI00964561   IPI00966054   IPI00964894   IPI00964261   IPI00967417   
Protein Interaction databases
DIP (DOE-UCLA)P14406
IntAct (EBI)P14406
FunCoupENSG00000112695
BioGRIDCOX7A2
STRING (EMBL)COX7A2
ZODIACCOX7A2
Ontologies - Pathways
QuickGOP14406
Ontology : AmiGOcytochrome-c oxidase activity  mitochondrial respiratory chain  electron transport chain  extracellular exosome  hydrogen ion transmembrane transport  
Ontology : EGO-EBIcytochrome-c oxidase activity  mitochondrial respiratory chain  electron transport chain  extracellular exosome  hydrogen ion transmembrane transport  
Pathways : KEGGOxidative phosphorylation   
NDEx NetworkCOX7A2
Atlas of Cancer Signalling NetworkCOX7A2
Wikipedia pathwaysCOX7A2
Orthology - Evolution
OrthoDB1347
GeneTree (enSembl)ENSG00000112695
Phylogenetic Trees/Animal Genes : TreeFamCOX7A2
HOVERGENP14406
HOGENOMP14406
Homologs : HomoloGeneCOX7A2
Homology/Alignments : Family Browser (UCSC)COX7A2
Gene fusions - Rearrangements
Fusion : QuiverCOX7A2
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerCOX7A2 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)COX7A2
dbVarCOX7A2
ClinVarCOX7A2
1000_GenomesCOX7A2 
Exome Variant ServerCOX7A2
ExAC (Exome Aggregation Consortium)ENSG00000112695
GNOMAD BrowserENSG00000112695
Genetic variants : HAPMAP1347
Genomic Variants (DGV)COX7A2 [DGVbeta]
DECIPHERCOX7A2 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisCOX7A2 
Mutations
ICGC Data PortalCOX7A2 
TCGA Data PortalCOX7A2 
Broad Tumor PortalCOX7A2
OASIS PortalCOX7A2 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICCOX7A2  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDCOX7A2
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
LOVD (Leiden Open Variation Database)MSeqDR-LSDB Mitochondrial Disease Locus Specific Database
BioMutasearch COX7A2
DgiDB (Drug Gene Interaction Database)COX7A2
DoCM (Curated mutations)COX7A2 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)COX7A2 (select a term)
intoGenCOX7A2
Cancer3DCOX7A2(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM123996   
Orphanet
DisGeNETCOX7A2
MedgenCOX7A2
Genetic Testing Registry COX7A2
NextProtP14406 [Medical]
TSGene1347
GENETestsCOX7A2
Target ValidationCOX7A2
Huge Navigator COX7A2 [HugePedia]
snp3D : Map Gene to Disease1347
BioCentury BCIQCOX7A2
ClinGenCOX7A2
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD1347
Chemical/Pharm GKB GenePA26806
Clinical trialCOX7A2
Miscellaneous
canSAR (ICR)COX7A2 (select the gene name)
Probes
Litterature
PubMed26 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineCOX7A2
EVEXCOX7A2
GoPubMedCOX7A2
iHOPCOX7A2
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Fri Jun 22 16:20:36 CEST 2018

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