Atlas of Genetics and Cytogenetics in Oncology and Haematology


Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

X Y 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 NA

COX7B2 (cytochrome c oxidase subunit 7B2)

Identity

Alias_namescytochrome c oxidase subunit VIIb2
Other alias-
HGNC (Hugo) COX7B2
LocusID (NCBI) 170712
Atlas_Id 46579
Location 4p12  [Link to chromosome band 4p12]
Location_base_pair Starts at 46734830 and ends at 46909235 bp from pter ( according to hg38-Dec_2013)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)COX7B2   24381
Cards
Entrez_Gene (NCBI)COX7B2  170712  cytochrome c oxidase subunit 7B2
Aliases
GeneCards (Weizmann)COX7B2
Ensembl hg19 (Hinxton)ENSG00000170516 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000170516 [Gene_View]  chr4:46734830-46909235 [Contig_View]  COX7B2 [Vega]
ICGC DataPortalENSG00000170516
TCGA cBioPortalCOX7B2
AceView (NCBI)COX7B2
Genatlas (Paris)COX7B2
WikiGenes170712
SOURCE (Princeton)COX7B2
Genetics Home Reference (NIH)COX7B2
Genomic and cartography
GoldenPath hg38 (UCSC)COX7B2  -     chr4:46734830-46909235 -  4p12   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)COX7B2  -     4p12   [Description]    (hg19-Feb_2009)
EnsemblCOX7B2 - 4p12 [CytoView hg19]  COX7B2 - 4p12 [CytoView hg38]
Mapping of homologs : NCBICOX7B2 [Mapview hg19]  COX7B2 [Mapview hg38]
OMIM609811   
Gene and transcription
Genbank (Entrez)AF125109 BC035923 BC107855 DB447854 HQ448477
RefSeq transcript (Entrez)NM_130902
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)COX7B2
Cluster EST : UnigeneHs.479656 [ NCBI ]
CGAP (NCI)Hs.479656
Alternative Splicing GalleryENSG00000170516
Gene ExpressionCOX7B2 [ NCBI-GEO ]   COX7B2 [ EBI - ARRAY_EXPRESS ]   COX7B2 [ SEEK ]   COX7B2 [ MEM ]
Gene Expression Viewer (FireBrowse)COX7B2 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)170712
GTEX Portal (Tissue expression)COX7B2
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ8TF08   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ8TF08  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ8TF08
Splice isoforms : SwissVarQ8TF08
PhosPhoSitePlusQ8TF08
Domains : Interpro (EBI)Cyt_c_oxidase_suVIIB    Cyt_c_oxidase_suVIIB_dom   
Domain families : Pfam (Sanger)COX7B (PF05392)   
Domain families : Pfam (NCBI)pfam05392   
Conserved Domain (NCBI)COX7B2
DMDM Disease mutations170712
Blocks (Seattle)COX7B2
SuperfamilyQ8TF08
Human Protein AtlasENSG00000170516
Peptide AtlasQ8TF08
HPRD13089
IPIIPI00873351   IPI01013736   IPI00966678   
Protein Interaction databases
DIP (DOE-UCLA)Q8TF08
IntAct (EBI)Q8TF08
FunCoupENSG00000170516
BioGRIDCOX7B2
STRING (EMBL)COX7B2
ZODIACCOX7B2
Ontologies - Pathways
QuickGOQ8TF08
Ontology : AmiGOcytochrome-c oxidase activity  mitochondrion  mitochondrial respiratory chain  integral component of membrane  respiratory chain complex IV  hydrogen ion transmembrane transport  
Ontology : EGO-EBIcytochrome-c oxidase activity  mitochondrion  mitochondrial respiratory chain  integral component of membrane  respiratory chain complex IV  hydrogen ion transmembrane transport  
Pathways : KEGGOxidative phosphorylation    Cardiac muscle contraction    Non-alcoholic fatty liver disease (NAFLD)    Alzheimer's disease    Parkinson's disease    Huntington's disease   
NDEx NetworkCOX7B2
Atlas of Cancer Signalling NetworkCOX7B2
Wikipedia pathwaysCOX7B2
Orthology - Evolution
OrthoDB170712
GeneTree (enSembl)ENSG00000170516
Phylogenetic Trees/Animal Genes : TreeFamCOX7B2
HOVERGENQ8TF08
HOGENOMQ8TF08
Homologs : HomoloGeneCOX7B2
Homology/Alignments : Family Browser (UCSC)COX7B2
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerCOX7B2 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)COX7B2
dbVarCOX7B2
ClinVarCOX7B2
1000_GenomesCOX7B2 
Exome Variant ServerCOX7B2
ExAC (Exome Aggregation Consortium)COX7B2 (select the gene name)
Genetic variants : HAPMAP170712
Genomic Variants (DGV)COX7B2 [DGVbeta]
DECIPHERCOX7B2 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisCOX7B2 
Mutations
ICGC Data PortalCOX7B2 
TCGA Data PortalCOX7B2 
Broad Tumor PortalCOX7B2
OASIS PortalCOX7B2 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICCOX7B2  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDCOX7B2
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
LOVD (Leiden Open Variation Database)MSeqDR-LSDB Mitochondrial Disease Locus Specific Database
BioMutasearch COX7B2
DgiDB (Drug Gene Interaction Database)COX7B2
DoCM (Curated mutations)COX7B2 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)COX7B2 (select a term)
intoGenCOX7B2
Cancer3DCOX7B2(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM609811   
Orphanet
MedgenCOX7B2
Genetic Testing Registry COX7B2
NextProtQ8TF08 [Medical]
TSGene170712
GENETestsCOX7B2
Target ValidationCOX7B2
Huge Navigator COX7B2 [HugePedia]
snp3D : Map Gene to Disease170712
BioCentury BCIQCOX7B2
ClinGenCOX7B2
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD170712
Chemical/Pharm GKB GenePA134885922
Clinical trialCOX7B2
Miscellaneous
canSAR (ICR)COX7B2 (select the gene name)
Probes
Litterature
PubMed8 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineCOX7B2
EVEXCOX7B2
GoPubMedCOX7B2
iHOPCOX7B2
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Mon Sep 25 19:03:30 CEST 2017

Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

For comments and suggestions or contributions, please contact us

jlhuret@AtlasGeneticsOncology.org.