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Taking over the Atlas
Dear Colleagues,
The Atlas, once more, is in great danger, and I will have to proceed to a collective economic lay-off of all the team involved in the Atlas before the begining of April 2015 (a foundation having suddenly withdrawn its commitment to support the Atlas). I ask you herein if any Scientific Society (a Society of Cytogenetics, of Clinical Genetics, of Hematology, or a Cancer Society, or any other...), any University and/or Hospital, any Charity, or any database would be interested in taking over the Atlas, in whole or in part. If taking charge of the whole lot is too big, a consortium of various actors could be the solution (I am myself trying to find partners). Could you please spread the information, contact the relevant authorities, and find partners.
Survival of the Atlas will be critically dependant upon your ability to find solutions (and urgently!).
Kind regards.
Jean-Loup Huret jlhuret@AtlasGeneticsOncology.org
Donations are also welcome
If each casual visitor gives 3 Euros or Dollars, the Atlas is saved in a week !
If each professional gives 100 Euros or Dollars once a year (now), the Atlas is saved in 2 weeks !
Don't let the Atlas imminent demise
Note: we send fiscal receipts for donations equal or above 50 Euros or Dollars

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CP (ceruloplasmin (ferroxidase))

Identity

Other namesCP-2
HGNC (Hugo) CP
LocusID (NCBI) 1356
Location 3q24
Location_base_pair Starts at 148890290 and ends at 148939832 bp from pter ( according to hg19-Feb_2009)
Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 

Other Solid tumors implicated (Data extracted from papers in the Atlas)

Solid Tumors AmeloblastomID5945

External links

Nomenclature
HGNC (Hugo)CP   2295
Cards
Entrez_Gene (NCBI)CP  1356  ceruloplasmin (ferroxidase)
GeneCards (Weizmann)CP
Ensembl hg19 (Hinxton)ENSG00000047457 [Gene_View]  chr3:148890290-148939832 [Contig_View]  CP [Vega]
Ensembl hg38 (Hinxton)ENSG00000047457 [Gene_View]  chr3:148890290-148939832 [Contig_View]  CP [Vega]
ICGC DataPortalENSG00000047457
cBioPortalCP
AceView (NCBI)CP
Genatlas (Paris)CP
WikiGenes1356
SOURCE (Princeton)CP
Genomic and cartography
GoldenPath hg19 (UCSC)CP  -     chr3:148890290-148939832 -  3q24   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)CP  -     3q24   [Description]    (hg38-Dec_2013)
EnsemblCP - 3q24 [CytoView hg19]  CP - 3q24 [CytoView hg38]
Mapping of homologs : NCBICP [Mapview hg19]  CP [Mapview hg38]
OMIM117700   604290   
Gene and transcription
Genbank (Entrez)AK095290 AK291219 AK299272 AK309279 BC039239
RefSeq transcript (Entrez)NM_000096
RefSeq genomic (Entrez)NC_000003 NC_018914 NG_011800 NT_005612 NW_004929311
Consensus coding sequences : CCDS (NCBI)CP
Cluster EST : UnigeneHs.558314 [ NCBI ]
CGAP (NCI)Hs.558314
Alternative Splicing : Fast-db (Paris)GSHG0022141
Alternative Splicing GalleryENSG00000047457
Gene ExpressionCP [ NCBI-GEO ]     CP [ SEEK ]   CP [ MEM ]
SOURCE (Princeton)Expression in : [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
Protein : pattern, domain, 3D structure
UniProt/SwissProtP00450 (Uniprot)
NextProtP00450  [Medical]
With graphics : InterProP00450
Splice isoforms : SwissVarP00450 (Swissvar)
Catalytic activity : Enzyme1.16.3.1 [ Enzyme-Expasy ]   1.16.3.11.16.3.1 [ IntEnz-EBI ]   1.16.3.1 [ BRENDA ]   1.16.3.1 [ KEGG ]   
Domaine pattern : Prosite (Expaxy)MULTICOPPER_OXIDASE1 (PS00079)    MULTICOPPER_OXIDASE2 (PS00080)   
Domains : Interpro (EBI)CP    Cu-oxidase    Cu-oxidase_2    Cu-oxidase_3    Cu_oxidase_Cu_BS    Cupredoxin   
Related proteins : CluSTrP00450
Domain families : Pfam (Sanger)Cu-oxidase (PF00394)    Cu-oxidase_2 (PF07731)    Cu-oxidase_3 (PF07732)   
Domain families : Pfam (NCBI)pfam00394    pfam07731    pfam07732   
DMDM Disease mutations1356
Blocks (Seattle)P00450
PDB (SRS)1KCW    2J5W    4EJX    4ENZ   
PDB (PDBSum)1KCW    2J5W    4EJX    4ENZ   
PDB (IMB)1KCW    2J5W    4EJX    4ENZ   
PDB (RSDB)1KCW    2J5W    4EJX    4ENZ   
Human Protein AtlasENSG00000047457
Peptide AtlasP00450
HPRD00317
IPIIPI00017601   IPI00946590   IPI00947307   IPI00793108   IPI00879084   
Protein Interaction databases
DIP (DOE-UCLA)P00450
IntAct (EBI)P00450
FunCoupENSG00000047457
BioGRIDCP
IntegromeDBCP
STRING (EMBL)CP
Ontologies - Pathways
QuickGOP00450
Ontology : AmiGOferroxidase activity  copper ion binding  extracellular region  extracellular region  extracellular space  lysosomal membrane  copper ion transport  cellular iron ion homeostasis  chaperone binding  transmembrane transport  oxidation-reduction process  extracellular exosome  blood microparticle  
Ontology : EGO-EBIferroxidase activity  copper ion binding  extracellular region  extracellular region  extracellular space  lysosomal membrane  copper ion transport  cellular iron ion homeostasis  chaperone binding  transmembrane transport  oxidation-reduction process  extracellular exosome  blood microparticle  
Pathways : KEGGPorphyrin and chlorophyll metabolism   
Protein Interaction DatabaseCP
DoCM (Curated mutations)CP
Wikipedia pathwaysCP
Gene fusion - rearrangements
Polymorphisms : SNP, variants
NCBI Variation ViewerCP [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)CP
dbVarCP
ClinVarCP
1000_GenomesCP 
Exome Variant ServerCP
SNP (GeneSNP Utah)CP
SNP : HGBaseCP
Genetic variants : HAPMAPCP
Genomic Variants (DGV)CP [DGVbeta]
Mutations
ICGC Data PortalENSG00000047457 
Somatic Mutations in Cancer : COSMICCP 
CONAN: Copy Number AnalysisCP 
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] 
Diseases
DECIPHER (Syndromes)3:148890290-148939832
Mutations and Diseases : HGMDCP
OMIM117700    604290   
MedgenCP
NextProtP00450 [Medical]
GENETestsCP
Disease Genetic AssociationCP
Huge Navigator CP [HugePedia]  CP [HugeCancerGEM]
snp3D : Map Gene to Disease1356
DGIdb (Drug Gene Interaction db)CP
General knowledge
Homologs : HomoloGeneCP
Homology/Alignments : Family Browser (UCSC)CP
Phylogenetic Trees/Animal Genes : TreeFamCP
Chemical/Protein Interactions : CTD1356
Chemical/Pharm GKB GenePA26815
Clinical trialCP
Cancer Resource (Charite)ENSG00000047457
Other databases
Probes
Litterature
PubMed151 Pubmed reference(s) in Entrez
CoreMineCP
GoPubMedCP
iHOPCP
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

Contributor(s)

Written09-2002Dessen P, Le Minor S
Updated02-2015Dessen P

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Sat Mar 28 15:06:39 CET 2015

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For comments and suggestions or contributions, please contact us

jlhuret@AtlasGeneticsOncology.org.