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CP (ceruloplasmin (ferroxidase))

Identity

Other namesCP-2
HGNC (Hugo) CP
LocusID (NCBI) 1356
Location 3q24
Location_base_pair Starts at 148890290 and ends at 148939832 bp from pter ( according to hg19-Feb_2009)
Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 

External links

Nomenclature
HGNC (Hugo)CP   2295
Cards
Entrez_Gene (NCBI)CP  1356  ceruloplasmin (ferroxidase)
GeneCards (Weizmann)CP
Ensembl (Hinxton)ENSG00000047457 [Gene_View]  chr3:148890290-148939832 [Contig_View]  CP [Vega]
ICGC DataPortalENSG00000047457
cBioPortalCP
AceView (NCBI)CP
Genatlas (Paris)CP
WikiGenes1356
SOURCE (Princeton)NM_000096
Genomic and cartography
GoldenPath (UCSC)CP  -  3q24   chr3:148890290-148939832 -  3q24   [Description]    (hg19-Feb_2009)
EnsemblCP - 3q24 [CytoView]
Mapping of homologs : NCBICP [Mapview]
OMIM117700   604290   
Gene and transcription
Genbank (Entrez)AK095290 AK291219 AK299272 AK309279 BC039239
RefSeq transcript (Entrez)NM_000096
RefSeq genomic (Entrez)AC_000135 NC_000003 NC_018914 NG_011800 NT_005612 NW_001838884 NW_004929311
Consensus coding sequences : CCDS (NCBI)CP
Cluster EST : UnigeneHs.558314 [ NCBI ]
CGAP (NCI)Hs.558314
Alternative Splicing : Fast-db (Paris)GSHG0022141
Alternative Splicing GalleryENSG00000047457
Gene ExpressionCP [ NCBI-GEO ]     CP [ SEEK ]   CP [ MEM ]
Protein : pattern, domain, 3D structure
UniProt/SwissProtP00450 (Uniprot)
NextProtP00450  [Medical]
With graphics : InterProP00450
Splice isoforms : SwissVarP00450 (Swissvar)
Catalytic activity : Enzyme1.16.3.1 [ Enzyme-Expasy ]   1.16.3.11.16.3.1 [ IntEnz-EBI ]   1.16.3.1 [ BRENDA ]   1.16.3.1 [ KEGG ]   
Domaine pattern : Prosite (Expaxy)MULTICOPPER_OXIDASE1 (PS00079)    MULTICOPPER_OXIDASE2 (PS00080)   
Domains : Interpro (EBI)CP [organisation]   Cu-oxidase [organisation]   Cu-oxidase_2 [organisation]   Cu-oxidase_3 [organisation]   Cu_oxidase_Cu_BS [organisation]   Cupredoxin [organisation]  
Related proteins : CluSTrP00450
Domain families : Pfam (Sanger)Cu-oxidase (PF00394)    Cu-oxidase_2 (PF07731)    Cu-oxidase_3 (PF07732)   
Domain families : Pfam (NCBI)pfam00394    pfam07731    pfam07732   
DMDM Disease mutations1356
Blocks (Seattle)P00450
PDB (SRS)1KCW    2J5W    4EJX    4ENZ   
PDB (PDBSum)1KCW    2J5W    4EJX    4ENZ   
PDB (IMB)1KCW    2J5W    4EJX    4ENZ   
PDB (RSDB)1KCW    2J5W    4EJX    4ENZ   
Human Protein AtlasENSG00000047457 [gene] [tissue] [antibody] [cell] [cancer]
Peptide AtlasP00450
HPRD00317
IPIIPI00017601   IPI00946590   IPI00947307   IPI00793108   IPI00879084   
Protein Interaction databases
DIP (DOE-UCLA)P00450
IntAct (EBI)P00450
FunCoupENSG00000047457
BioGRIDCP
InParanoidP00450
Interologous Interaction database P00450
IntegromeDBCP
STRING (EMBL)CP
Ontologies - Pathways
Ontology : AmiGOferroxidase activity  copper ion binding  extracellular region  extracellular region  extracellular space  lysosomal membrane  copper ion transport  cellular iron ion homeostasis  chaperone binding  transmembrane transport  oxidation-reduction process  extracellular vesicular exosome  blood microparticle  
Ontology : EGO-EBIferroxidase activity  copper ion binding  extracellular region  extracellular region  extracellular space  lysosomal membrane  copper ion transport  cellular iron ion homeostasis  chaperone binding  transmembrane transport  oxidation-reduction process  extracellular vesicular exosome  blood microparticle  
Pathways : KEGGPorphyrin and chlorophyll metabolism   
Protein Interaction DatabaseCP
Wikipedia pathwaysCP
Gene fusion - rearrangments
Polymorphisms : SNP, mutations, diseases
SNP Single Nucleotide Polymorphism (NCBI)CP
snp3D : Map Gene to Disease1356
SNP (GeneSNP Utah)CP
SNP : HGBaseCP
Genetic variants : HAPMAPCP
Exome VariantCP
1000_GenomesCP 
ICGC programENSG00000047457 
Somatic Mutations in Cancer : COSMICCP 
CONAN: Copy Number AnalysisCP 
Mutations and Diseases : HGMDCP
Mutations and Diseases : intOGenCP
Genomic VariantsCP  CP [DGVbeta]
dbVarCP
ClinVarCP
Pred. of missensesPolyPhen-2  SIFT(SG)  SIFT(JCVI)  Align-GVGD  MutAssessor  Mutanalyser  
Pred. splicesGeneSplicer  Human Splicing Finder  MaxEntScan  
Diseases
OMIM117700    604290   
MedgenCP
GENETestsCP
Disease Genetic AssociationCP
Huge Navigator CP [HugePedia]  CP [HugeCancerGEM]
General knowledge
Homologs : HomoloGeneCP
Homology/Alignments : Family Browser (UCSC)CP
Phylogenetic Trees/Animal Genes : TreeFamCP
Chemical/Protein Interactions : CTD1356
Chemical/Pharm GKB GenePA26815
Clinical trialCP
Cancer Resource (Charite)ENSG00000047457
Other databases
Probes
Litterature
PubMed143 Pubmed reference(s) in Entrez
CoreMineCP
iHOPCP
OncoSearchCP
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

Contributor(s)

Written09-2002Dessen P, Le Minor S
Updated12-2013Dessen P

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Mon Sep 22 18:45:55 CEST 2014

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