Atlas of Genetics and Cytogenetics in Oncology and Haematology


Home   Genes   Leukemias   Solid Tumours   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

X Y 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 NA

CPA4 (carboxypeptidase A4)

Identity

Alias_symbol (synonym)CPA3
Other alias
HGNC (Hugo) CPA4
LocusID (NCBI) 51200
Atlas_Id 50869
Location 7q32.2  [Link to chromosome band 7q32]
Location_base_pair Starts at 129932974 and ends at 129964020 bp from pter ( according to hg19-Feb_2009)
Fusion genes
(updated 2016)
CPA4 (7q32.2) / CPA4 (7q32.2)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)CPA4   15740
LRG (Locus Reference Genomic)LRG_1038
Cards
Entrez_Gene (NCBI)CPA4  51200  carboxypeptidase A4
AliasesCPA3
GeneCards (Weizmann)CPA4
Ensembl hg19 (Hinxton)ENSG00000128510 [Gene_View]  chr7:129932974-129964020 [Contig_View]  CPA4 [Vega]
Ensembl hg38 (Hinxton)ENSG00000128510 [Gene_View]  chr7:129932974-129964020 [Contig_View]  CPA4 [Vega]
ICGC DataPortalENSG00000128510
TCGA cBioPortalCPA4
AceView (NCBI)CPA4
Genatlas (Paris)CPA4
WikiGenes51200
SOURCE (Princeton)CPA4
Genetics Home Reference (NIH)CPA4
Genomic and cartography
GoldenPath hg19 (UCSC)CPA4  -     chr7:129932974-129964020 +  7q32.2   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)CPA4  -     7q32.2   [Description]    (hg38-Dec_2013)
EnsemblCPA4 - 7q32.2 [CytoView hg19]  CPA4 - 7q32.2 [CytoView hg38]
Mapping of homologs : NCBICPA4 [Mapview hg19]  CPA4 [Mapview hg38]
OMIM607635   
Gene and transcription
Genbank (Entrez)AF095719 AK290993 AK298550 AK298553 AK299023
RefSeq transcript (Entrez)NM_001163446 NM_016352
RefSeq genomic (Entrez)NC_000007 NC_018918 NG_011788 NT_007933 NW_004929332
Consensus coding sequences : CCDS (NCBI)CPA4
Cluster EST : UnigeneHs.93764 [ NCBI ]
CGAP (NCI)Hs.93764
Alternative Splicing GalleryENSG00000128510
Gene ExpressionCPA4 [ NCBI-GEO ]   CPA4 [ EBI - ARRAY_EXPRESS ]   CPA4 [ SEEK ]   CPA4 [ MEM ]
Gene Expression Viewer (FireBrowse)CPA4 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)51200
GTEX Portal (Tissue expression)CPA4
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9UI42   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9UI42  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9UI42
Splice isoforms : SwissVarQ9UI42
Catalytic activity : Enzyme3.4.17.- [ Enzyme-Expasy ]   3.4.17.-3.4.17.- [ IntEnz-EBI ]   3.4.17.- [ BRENDA ]   3.4.17.- [ KEGG ]   
PhosPhoSitePlusQ9UI42
Domaine pattern : Prosite (Expaxy)CARBOXYPEPT_ZN_1 (PS00132)    CARBOXYPEPT_ZN_2 (PS00133)   
Domains : Interpro (EBI)Peptidase_M14    Prot_inh_M14A    Prot_inh_propept   
Domain families : Pfam (Sanger)Peptidase_M14 (PF00246)    Propep_M14 (PF02244)   
Domain families : Pfam (NCBI)pfam00246    pfam02244   
Domain families : Smart (EMBL)Zn_pept (SM00631)  
Conserved Domain (NCBI)CPA4
DMDM Disease mutations51200
Blocks (Seattle)CPA4
PDB (SRS)2BO9    2BOA    2PCU    4A94    4BD9   
PDB (PDBSum)2BO9    2BOA    2PCU    4A94    4BD9   
PDB (IMB)2BO9    2BOA    2PCU    4A94    4BD9   
PDB (RSDB)2BO9    2BOA    2PCU    4A94    4BD9   
Structural Biology KnowledgeBase2BO9    2BOA    2PCU    4A94    4BD9   
SCOP (Structural Classification of Proteins)2BO9    2BOA    2PCU    4A94    4BD9   
CATH (Classification of proteins structures)2BO9    2BOA    2PCU    4A94    4BD9   
SuperfamilyQ9UI42
Human Protein AtlasENSG00000128510
Peptide AtlasQ9UI42
HPRD07405
IPIIPI00008894   IPI01014719   IPI00943846   IPI01012949   IPI00945035   IPI00947486   IPI00945179   
Protein Interaction databases
DIP (DOE-UCLA)Q9UI42
IntAct (EBI)Q9UI42
FunCoupENSG00000128510
BioGRIDCPA4
STRING (EMBL)CPA4
ZODIACCPA4
Ontologies - Pathways
QuickGOQ9UI42
Ontology : AmiGOmetallocarboxypeptidase activity  metallocarboxypeptidase activity  cellular_component  extracellular space  proteolysis  zinc ion binding  histone acetylation  
Ontology : EGO-EBImetallocarboxypeptidase activity  metallocarboxypeptidase activity  cellular_component  extracellular space  proteolysis  zinc ion binding  histone acetylation  
NDEx NetworkCPA4
Atlas of Cancer Signalling NetworkCPA4
Wikipedia pathwaysCPA4
Orthology - Evolution
OrthoDB51200
GeneTree (enSembl)ENSG00000128510
Phylogenetic Trees/Animal Genes : TreeFamCPA4
HOVERGENQ9UI42
HOGENOMQ9UI42
Homologs : HomoloGeneCPA4
Homology/Alignments : Family Browser (UCSC)CPA4
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerCPA4 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)CPA4
dbVarCPA4
ClinVarCPA4
1000_GenomesCPA4 
Exome Variant ServerCPA4
ExAC (Exome Aggregation Consortium)CPA4 (select the gene name)
Genetic variants : HAPMAP51200
Genomic Variants (DGV)CPA4 [DGVbeta]
DECIPHER (Syndromes)7:129932974-129964020  ENSG00000128510
CONAN: Copy Number AnalysisCPA4 
Mutations
ICGC Data PortalCPA4 
TCGA Data PortalCPA4 
Broad Tumor PortalCPA4
OASIS PortalCPA4 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICCPA4  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDCPA4
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch CPA4
DgiDB (Drug Gene Interaction Database)CPA4
DoCM (Curated mutations)CPA4 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)CPA4 (select a term)
intoGenCPA4
Cancer3DCPA4(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM607635   
Orphanet
MedgenCPA4
Genetic Testing Registry CPA4
NextProtQ9UI42 [Medical]
TSGene51200
GENETestsCPA4
Huge Navigator CPA4 [HugePedia]
snp3D : Map Gene to Disease51200
BioCentury BCIQCPA4
ClinGenCPA4 (curated)
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD51200
Chemical/Pharm GKB GenePA26819
Clinical trialCPA4
Miscellaneous
canSAR (ICR)CPA4 (select the gene name)
Probes
Litterature
PubMed16 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineCPA4
EVEXCPA4
GoPubMedCPA4
iHOPCPA4
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Tue Mar 14 13:01:30 CET 2017

Home   Genes   Leukemias   Solid Tumours   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

For comments and suggestions or contributions, please contact us

jlhuret@AtlasGeneticsOncology.org.