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CPAMD8 (C3 and PZP like, alpha-2-macroglobulin domain containing 8)

Identity

Alias_symbol (synonym)KIAA1283
VIP
K-CAP
Other aliasASGD8
HGNC (Hugo) CPAMD8
LocusID (NCBI) 27151
Atlas_Id 62047
Location 19p13.11  [Link to chromosome band 19p13]
Location_base_pair Starts at 16892951 and ends at 17026815 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
CHERP (19p13.11) / CPAMD8 (19p13.11)CPAMD8 (19p13.11) / HAUS8 (19p13.11)HOOK2 (19p13.2) / CPAMD8 (19p13.11)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)CPAMD8   23228
Cards
Entrez_Gene (NCBI)CPAMD8  27151  C3 and PZP like, alpha-2-macroglobulin domain containing 8
AliasesASGD8; K-CAP; VIP
GeneCards (Weizmann)CPAMD8
Ensembl hg19 (Hinxton)ENSG00000160111 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000160111 [Gene_View]  chr19:16892951-17026815 [Contig_View]  CPAMD8 [Vega]
ICGC DataPortalENSG00000160111
TCGA cBioPortalCPAMD8
AceView (NCBI)CPAMD8
Genatlas (Paris)CPAMD8
WikiGenes27151
SOURCE (Princeton)CPAMD8
Genetics Home Reference (NIH)CPAMD8
Genomic and cartography
GoldenPath hg38 (UCSC)CPAMD8  -     chr19:16892951-17026815 -  19p13.11   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)CPAMD8  -     19p13.11   [Description]    (hg19-Feb_2009)
EnsemblCPAMD8 - 19p13.11 [CytoView hg19]  CPAMD8 - 19p13.11 [CytoView hg38]
Mapping of homologs : NCBICPAMD8 [Mapview hg19]  CPAMD8 [Mapview hg38]
OMIM608841   617319   
Gene and transcription
Genbank (Entrez)AB033109 AI670110 AK075099 AK092632 AK124052
RefSeq transcript (Entrez)NM_015692
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)CPAMD8
Cluster EST : UnigeneHs.631644 [ NCBI ]
CGAP (NCI)Hs.631644
Alternative Splicing GalleryENSG00000160111
Gene ExpressionCPAMD8 [ NCBI-GEO ]   CPAMD8 [ EBI - ARRAY_EXPRESS ]   CPAMD8 [ SEEK ]   CPAMD8 [ MEM ]
Gene Expression Viewer (FireBrowse)CPAMD8 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)27151
GTEX Portal (Tissue expression)CPAMD8
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ8IZJ3   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ8IZJ3  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ8IZJ3
Splice isoforms : SwissVarQ8IZJ3
PhosPhoSitePlusQ8IZJ3
Domaine pattern : Prosite (Expaxy)ALPHA_2_MACROGLOBULIN (PS00477)    KAZAL_2 (PS51465)   
Domains : Interpro (EBI)A-macroglobulin_rcpt-bd    A2M_comp    A2M_N    A2M_N_2    Ig_E-set    Kazal_dom    Macroglobln_a2    MacrogloblnA2_CS    MacrogloblnA2_thiol-ester-bond    Methyltransf_FA    Terpenoid_cyclase/PrenylTrfase   
Domain families : Pfam (Sanger)A2M (PF00207)    A2M_comp (PF07678)    A2M_N (PF01835)    A2M_N_2 (PF07703)    A2M_recep (PF07677)    Kazal_2 (PF07648)    Methyltransf_FA (PF12248)    Thiol-ester_cl (PF10569)   
Domain families : Pfam (NCBI)pfam00207    pfam07678    pfam01835    pfam07703    pfam07677    pfam07648    pfam12248    pfam10569   
Domain families : Smart (EMBL)A2M (SM01360)  A2M_N_2 (SM01359)  A2M_recep (SM01361)  KAZAL (SM00280)  
Conserved Domain (NCBI)CPAMD8
DMDM Disease mutations27151
Blocks (Seattle)CPAMD8
SuperfamilyQ8IZJ3
Human Protein AtlasENSG00000160111
Peptide AtlasQ8IZJ3
HPRD09892
IPIIPI00783366   IPI00291807   IPI00432875   
Protein Interaction databases
DIP (DOE-UCLA)Q8IZJ3
IntAct (EBI)Q8IZJ3
FunCoupENSG00000160111
BioGRIDCPAMD8
STRING (EMBL)CPAMD8
ZODIACCPAMD8
Ontologies - Pathways
QuickGOQ8IZJ3
Ontology : AmiGOeye development  serine-type endopeptidase inhibitor activity  extracellular space  plasma membrane  negative regulation of endopeptidase activity  
Ontology : EGO-EBIeye development  serine-type endopeptidase inhibitor activity  extracellular space  plasma membrane  negative regulation of endopeptidase activity  
NDEx NetworkCPAMD8
Atlas of Cancer Signalling NetworkCPAMD8
Wikipedia pathwaysCPAMD8
Orthology - Evolution
OrthoDB27151
GeneTree (enSembl)ENSG00000160111
Phylogenetic Trees/Animal Genes : TreeFamCPAMD8
HOVERGENQ8IZJ3
HOGENOMQ8IZJ3
Homologs : HomoloGeneCPAMD8
Homology/Alignments : Family Browser (UCSC)CPAMD8
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerCPAMD8 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)CPAMD8
dbVarCPAMD8
ClinVarCPAMD8
1000_GenomesCPAMD8 
Exome Variant ServerCPAMD8
ExAC (Exome Aggregation Consortium)CPAMD8 (select the gene name)
Genetic variants : HAPMAP27151
Genomic Variants (DGV)CPAMD8 [DGVbeta]
DECIPHERCPAMD8 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisCPAMD8 
Mutations
ICGC Data PortalCPAMD8 
TCGA Data PortalCPAMD8 
Broad Tumor PortalCPAMD8
OASIS PortalCPAMD8 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICCPAMD8  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDCPAMD8
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch CPAMD8
DgiDB (Drug Gene Interaction Database)CPAMD8
DoCM (Curated mutations)CPAMD8 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)CPAMD8 (select a term)
intoGenCPAMD8
Cancer3DCPAMD8(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM608841    617319   
Orphanet
MedgenCPAMD8
Genetic Testing Registry CPAMD8
NextProtQ8IZJ3 [Medical]
TSGene27151
GENETestsCPAMD8
Target ValidationCPAMD8
Huge Navigator CPAMD8 [HugePedia]
snp3D : Map Gene to Disease27151
BioCentury BCIQCPAMD8
ClinGenCPAMD8
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD27151
Chemical/Pharm GKB GenePA134915057
Clinical trialCPAMD8
Miscellaneous
canSAR (ICR)CPAMD8 (select the gene name)
Probes
Litterature
PubMed12 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineCPAMD8
EVEXCPAMD8
GoPubMedCPAMD8
iHOPCPAMD8
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Wed Jun 7 15:44:23 CEST 2017

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