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CPB1 (carboxypeptidase B1)

Identity

Other namesCPB
PASP
PCPB
HGNC (Hugo) CPB1
LocusID (NCBI) 1360
Atlas_Id 40138
Location 3q24
Location_base_pair Starts at 148545588 and ends at 148577972 bp from pter ( according to hg19-Feb_2009)
Fusion genes
(updated 2015)
HPS3 3q24 / CPB1 3q24

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)CPB1   2299
Cards
Entrez_Gene (NCBI)CPB1  1360  carboxypeptidase B1
GeneCards (Weizmann)CPB1
Ensembl hg19 (Hinxton)ENSG00000153002 [Gene_View]  chr3:148545588-148577972 [Contig_View]  CPB1 [Vega]
Ensembl hg38 (Hinxton)ENSG00000153002 [Gene_View]  chr3:148545588-148577972 [Contig_View]  CPB1 [Vega]
ICGC DataPortalENSG00000153002
TCGA cBioPortalCPB1
AceView (NCBI)CPB1
Genatlas (Paris)CPB1
WikiGenes1360
SOURCE (Princeton)CPB1
Genomic and cartography
GoldenPath hg19 (UCSC)CPB1  -     chr3:148545588-148577972 +  3q24   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)CPB1  -     3q24   [Description]    (hg38-Dec_2013)
EnsemblCPB1 - 3q24 [CytoView hg19]  CPB1 - 3q24 [CytoView hg38]
Mapping of homologs : NCBICPB1 [Mapview hg19]  CPB1 [Mapview hg38]
OMIM114852   
Gene and transcription
Genbank (Entrez)AJ224866 AK313940 BC015338 BI770145 BT009910
RefSeq transcript (Entrez)NM_001871
RefSeq genomic (Entrez)NC_000003 NC_018914 NT_005612 NW_004929311
Consensus coding sequences : CCDS (NCBI)CPB1
Cluster EST : UnigeneHs.477891 [ NCBI ]
CGAP (NCI)Hs.477891
Alternative Splicing : Fast-db (Paris)GSHG0021237
Alternative Splicing GalleryENSG00000153002
Gene ExpressionCPB1 [ NCBI-GEO ]     CPB1 [ SEEK ]   CPB1 [ MEM ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
BioGPS (Tissue expression)1360
Protein : pattern, domain, 3D structure
UniProt/SwissProtP15086 (Uniprot)
NextProtP15086  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProP15086
Splice isoforms : SwissVarP15086 (Swissvar)
Catalytic activity : Enzyme3.4.17.2 [ Enzyme-Expasy ]   3.4.17.2 [ Enzyme-SRS ]   3.4.17.2 [ IntEnz-EBI ]   3.4.17.2 [ PRIAM ]   3.4.17.2 [ BRENDA ]   3.4.17.2 [ KEGG ]   3.4.17.2 [ IUBMB ]
PhosPhoSitePlusP15086
Domaine pattern : Prosite (Expaxy)CARBOXYPEPT_ZN_1 (PS00132)    CARBOXYPEPT_ZN_2 (PS00133)   
Domains : Interpro (EBI)Peptidase_M14    Prot_inh_M14A    Prot_inh_propept   
Domain families : Pfam (Sanger)Peptidase_M14 (PF00246)    Propep_M14 (PF02244)   
Domain families : Pfam (NCBI)pfam00246    pfam02244   
Domain families : Smart (EMBL)Zn_pept (SM00631)  
DMDM Disease mutations1360
Blocks (Seattle)CPB1
PDB (SRS)1KWM    1ZLI   
PDB (PDBSum)1KWM    1ZLI   
PDB (IMB)1KWM    1ZLI   
PDB (RSDB)1KWM    1ZLI   
Structural Biology KnowledgeBase1KWM    1ZLI   
SCOP (Structural Classification of Proteins)1KWM    1ZLI   
CATH (Classification of proteins structures)1KWM    1ZLI   
Human Protein AtlasENSG00000153002
Peptide AtlasP15086
HPRD00271
IPIIPI00009826   IPI00797173   IPI00946055   IPI00945876   
Protein Interaction databases
DIP (DOE-UCLA)P15086
IntAct (EBI)P15086
FunCoupENSG00000153002
BioGRIDCPB1
IntegromeDBCPB1
STRING (EMBL)CPB1
ZODIACCPB1
Ontologies - Pathways
QuickGOP15086
Ontology : AmiGOcarboxypeptidase activity  metallocarboxypeptidase activity  extracellular space  proteolysis  zinc ion binding  
Ontology : EGO-EBIcarboxypeptidase activity  metallocarboxypeptidase activity  extracellular space  proteolysis  zinc ion binding  
Pathways : KEGGPancreatic secretion    Protein digestion and absorption   
Protein Interaction DatabaseCPB1
Atlas of Cancer Signalling NetworkCPB1
Wikipedia pathwaysCPB1
Orthology - Evolution
OrthoDB1360
GeneTree (enSembl)ENSG00000153002
Phylogenetic Trees/Animal Genes : TreeFamCPB1
Homologs : HomoloGeneCPB1
Homology/Alignments : Family Browser (UCSC)CPB1
Gene fusions - Rearrangements
Fusion: TCGAHPS3 3q24 CPB1 3q24 OV
Polymorphisms : SNP, variants
NCBI Variation ViewerCPB1 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)CPB1
dbVarCPB1
ClinVarCPB1
1000_GenomesCPB1 
Exome Variant ServerCPB1
Exome Aggregation Consortium (ExAC)ENSG00000153002
SNP (GeneSNP Utah)CPB1
SNP : HGBaseCPB1
Genetic variants : HAPMAPCPB1
Genomic Variants (DGV)CPB1 [DGVbeta]
Mutations
ICGC Data PortalCPB1 
TCGA Data PortalCPB1 
Tumor PortalCPB1
TCGA Copy Number PortalCPB1
Somatic Mutations in Cancer : COSMICCPB1 
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch CPB1
DgiDB (Drug Gene Interaction Database)CPB1
DoCM (Curated mutations)CPB1 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)CPB1 (select a term)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] 
Diseases
DECIPHER (Syndromes)3:148545588-148577972
CONAN: Copy Number AnalysisCPB1 
Mutations and Diseases : HGMDCPB1
OMIM114852   
MedgenCPB1
NextProtP15086 [Medical]
TSGene1360
GENETestsCPB1
Huge Navigator CPB1 [HugePedia]  CPB1 [HugeCancerGEM]
snp3D : Map Gene to Disease1360
BioCentury BCIQCPB1
General knowledge
Chemical/Protein Interactions : CTD1360
Chemical/Pharm GKB GenePA26821
Clinical trialCPB1
Other databases
Probes
Litterature
PubMed14 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineCPB1
GoPubMedCPB1
iHOPCPB1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Sat Jan 16 18:23:22 CET 2016

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