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CPB1 (carboxypeptidase B1 (tissue))

Identity

Other namesCPB
PASP
PCPB
HGNC (Hugo) CPB1
LocusID (NCBI) 1360
Location 3q24
Location_base_pair Starts at 148545588 and ends at 148577972 bp from pter ( according to hg19-Feb_2009)
Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 

External links

Nomenclature
HGNC (Hugo)CPB1   2299
Cards
Entrez_Gene (NCBI)CPB1  1360  carboxypeptidase B1 (tissue)
GeneCards (Weizmann)CPB1
Ensembl (Hinxton)ENSG00000153002 [Gene_View]  chr3:148545588-148577972 [Contig_View]  CPB1 [Vega]
ICGC DataPortalENSG00000153002
cBioPortalCPB1
AceView (NCBI)CPB1
Genatlas (Paris)CPB1
WikiGenes1360
SOURCE (Princeton)NM_001871
Genomic and cartography
GoldenPath (UCSC)CPB1  -  3q24   chr3:148545588-148577972 +  3q24   [Description]    (hg19-Feb_2009)
EnsemblCPB1 - 3q24 [CytoView]
Mapping of homologs : NCBICPB1 [Mapview]
OMIM114852   
Gene and transcription
Genbank (Entrez)AJ224866 AK313940 BC015338 BI770145 BT009910
RefSeq transcript (Entrez)NM_001871
RefSeq genomic (Entrez)AC_000135 NC_000003 NC_018914 NT_005612 NW_001838884 NW_004929311
Consensus coding sequences : CCDS (NCBI)CPB1
Cluster EST : UnigeneHs.477891 [ NCBI ]
CGAP (NCI)Hs.477891
Alternative Splicing : Fast-db (Paris)GSHG0021237
Alternative Splicing GalleryENSG00000153002
Gene ExpressionCPB1 [ NCBI-GEO ]     CPB1 [ SEEK ]   CPB1 [ MEM ]
Protein : pattern, domain, 3D structure
UniProt/SwissProtP15086 (Uniprot)
NextProtP15086  [Medical]
With graphics : InterProP15086
Splice isoforms : SwissVarP15086 (Swissvar)
Catalytic activity : Enzyme3.4.17.2 [ Enzyme-Expasy ]   3.4.17.23.4.17.2 [ IntEnz-EBI ]   3.4.17.2 [ BRENDA ]   3.4.17.2 [ KEGG ]   
Domaine pattern : Prosite (Expaxy)CARBOXYPEPT_ZN_1 (PS00132)    CARBOXYPEPT_ZN_2 (PS00133)   
Domains : Interpro (EBI)Peptidase_M14 [organisation]   Prot_inh_M14A [organisation]   Prot_inh_propept [organisation]  
Related proteins : CluSTrP15086
Domain families : Pfam (Sanger)Peptidase_M14 (PF00246)    Propep_M14 (PF02244)   
Domain families : Pfam (NCBI)pfam00246    pfam02244   
Domain families : Smart (EMBL)Zn_pept (SM00631)  
DMDM Disease mutations1360
Blocks (Seattle)P15086
PDB (SRS)1KWM    1ZLI   
PDB (PDBSum)1KWM    1ZLI   
PDB (IMB)1KWM    1ZLI   
PDB (RSDB)1KWM    1ZLI   
Human Protein AtlasENSG00000153002 [gene] [tissue] [antibody] [cell] [cancer]
Peptide AtlasP15086
HPRD00271
IPIIPI00009826   IPI00797173   IPI00946055   IPI00945876   
Protein Interaction databases
DIP (DOE-UCLA)P15086
IntAct (EBI)P15086
FunCoupENSG00000153002
BioGRIDCPB1
InParanoidP15086
Interologous Interaction database P15086
IntegromeDBCPB1
STRING (EMBL)CPB1
Ontologies - Pathways
Ontology : AmiGOcarboxypeptidase activity  metallocarboxypeptidase activity  extracellular region  proteolysis  zinc ion binding  
Ontology : EGO-EBIcarboxypeptidase activity  metallocarboxypeptidase activity  extracellular region  proteolysis  zinc ion binding  
Pathways : KEGGPancreatic secretion    Protein digestion and absorption   
Protein Interaction DatabaseCPB1
Wikipedia pathwaysCPB1
Gene fusion - rearrangments
Polymorphisms : SNP, mutations, diseases
SNP Single Nucleotide Polymorphism (NCBI)CPB1
snp3D : Map Gene to Disease1360
SNP (GeneSNP Utah)CPB1
SNP : HGBaseCPB1
Genetic variants : HAPMAPCPB1
Exome VariantCPB1
1000_GenomesCPB1 
ICGC programENSG00000153002 
Somatic Mutations in Cancer : COSMICCPB1 
CONAN: Copy Number AnalysisCPB1 
Mutations and Diseases : HGMDCPB1
Genomic VariantsCPB1  CPB1 [DGVbeta]
dbVarCPB1
ClinVarCPB1
Pred. of missensesPolyPhen-2  SIFT(SG)  SIFT(JCVI)  Align-GVGD  MutAssessor  Mutanalyser  
Pred. splicesGeneSplicer  Human Splicing Finder  MaxEntScan  
Diseases
OMIM114852   
MedgenCPB1
GENETestsCPB1
Disease Genetic AssociationCPB1
Huge Navigator CPB1 [HugePedia]  CPB1 [HugeCancerGEM]
General knowledge
Homologs : HomoloGeneCPB1
Homology/Alignments : Family Browser (UCSC)CPB1
Phylogenetic Trees/Animal Genes : TreeFamCPB1
Chemical/Protein Interactions : CTD1360
Chemical/Pharm GKB GenePA26821
Clinical trialCPB1
Cancer Resource (Charite)ENSG00000153002
Other databases
Probes
Litterature
PubMed14 Pubmed reference(s) in Entrez
CoreMineCPB1
iHOPCPB1
OncoSearchCPB1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

Contributor(s)

Written09-2002Dessen P, Le Minor S
Updated12-2013Dessen P

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Wed Jul 30 13:49:23 CEST 2014

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