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CPB1 (carboxypeptidase B1)

Identity

Alias_namescarboxypeptidase B1 (tissue)
HGNC (Hugo) CPB1
LocusID (NCBI) 1360
Atlas_Id 40138
Location 3q24  [Link to chromosome band 3q24]
Location_base_pair Starts at 148545588 and ends at 148577972 bp from pter ( according to hg19-Feb_2009)
Fusion genes
(updated 2016)
CPB1 (3q24) / CPB1 (3q24)HPS3 (3q24) / CPB1 (3q24)PNLIP (10q25.3) / CPB1 (3q24)
SYP (Xp11.23) / CPB1 (3q24)HPS3 3q24 / CPB1 3q24

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)CPB1   2299
Cards
Entrez_Gene (NCBI)CPB1  1360  carboxypeptidase B1
AliasesCPB; PASP; PCPB
GeneCards (Weizmann)CPB1
Ensembl hg19 (Hinxton)ENSG00000153002 [Gene_View]  chr3:148545588-148577972 [Contig_View]  CPB1 [Vega]
Ensembl hg38 (Hinxton)ENSG00000153002 [Gene_View]  chr3:148545588-148577972 [Contig_View]  CPB1 [Vega]
ICGC DataPortalENSG00000153002
TCGA cBioPortalCPB1
AceView (NCBI)CPB1
Genatlas (Paris)CPB1
WikiGenes1360
SOURCE (Princeton)CPB1
Genetics Home Reference (NIH)CPB1
Genomic and cartography
GoldenPath hg19 (UCSC)CPB1  -     chr3:148545588-148577972 +  3q24   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)CPB1  -     3q24   [Description]    (hg38-Dec_2013)
EnsemblCPB1 - 3q24 [CytoView hg19]  CPB1 - 3q24 [CytoView hg38]
Mapping of homologs : NCBICPB1 [Mapview hg19]  CPB1 [Mapview hg38]
OMIM114852   
Gene and transcription
Genbank (Entrez)AJ224866 AK313940 BC015338 BI770145 BT009910
RefSeq transcript (Entrez)NM_001871
RefSeq genomic (Entrez)NC_000003 NC_018914 NT_005612 NW_004929311
Consensus coding sequences : CCDS (NCBI)CPB1
Cluster EST : UnigeneHs.477891 [ NCBI ]
CGAP (NCI)Hs.477891
Alternative Splicing GalleryENSG00000153002
Gene ExpressionCPB1 [ NCBI-GEO ]   CPB1 [ EBI - ARRAY_EXPRESS ]   CPB1 [ SEEK ]   CPB1 [ MEM ]
Gene Expression Viewer (FireBrowse)CPB1 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)1360
GTEX Portal (Tissue expression)CPB1
Protein : pattern, domain, 3D structure
UniProt/SwissProtP15086   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtP15086  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProP15086
Splice isoforms : SwissVarP15086
PhosPhoSitePlusP15086
Domaine pattern : Prosite (Expaxy)CARBOXYPEPT_ZN_1 (PS00132)    CARBOXYPEPT_ZN_2 (PS00133)   
Domains : Interpro (EBI)Peptidase_M14    Prot_inh_M14A    Prot_inh_propept   
Domain families : Pfam (Sanger)Peptidase_M14 (PF00246)    Propep_M14 (PF02244)   
Domain families : Pfam (NCBI)pfam00246    pfam02244   
Domain families : Smart (EMBL)Zn_pept (SM00631)  
Conserved Domain (NCBI)CPB1
DMDM Disease mutations1360
Blocks (Seattle)CPB1
PDB (SRS)1KWM    1ZLI   
PDB (PDBSum)1KWM    1ZLI   
PDB (IMB)1KWM    1ZLI   
PDB (RSDB)1KWM    1ZLI   
Structural Biology KnowledgeBase1KWM    1ZLI   
SCOP (Structural Classification of Proteins)1KWM    1ZLI   
CATH (Classification of proteins structures)1KWM    1ZLI   
SuperfamilyP15086
Human Protein AtlasENSG00000153002
Peptide AtlasP15086
HPRD00271
IPIIPI00009826   IPI00797173   IPI00946055   IPI00945876   
Protein Interaction databases
DIP (DOE-UCLA)P15086
IntAct (EBI)P15086
FunCoupENSG00000153002
BioGRIDCPB1
STRING (EMBL)CPB1
ZODIACCPB1
Ontologies - Pathways
QuickGOP15086
Ontology : AmiGOcarboxypeptidase activity  metallocarboxypeptidase activity  extracellular space  proteolysis  zinc ion binding  
Ontology : EGO-EBIcarboxypeptidase activity  metallocarboxypeptidase activity  extracellular space  proteolysis  zinc ion binding  
Pathways : KEGGPancreatic secretion    Protein digestion and absorption   
NDEx NetworkCPB1
Atlas of Cancer Signalling NetworkCPB1
Wikipedia pathwaysCPB1
Orthology - Evolution
OrthoDB1360
GeneTree (enSembl)ENSG00000153002
Phylogenetic Trees/Animal Genes : TreeFamCPB1
HOVERGENP15086
HOGENOMP15086
Homologs : HomoloGeneCPB1
Homology/Alignments : Family Browser (UCSC)CPB1
Gene fusions - Rearrangements
Fusion: TCGAHPS3 3q24 CPB1 3q24 OV
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerCPB1 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)CPB1
dbVarCPB1
ClinVarCPB1
1000_GenomesCPB1 
Exome Variant ServerCPB1
ExAC (Exome Aggregation Consortium)CPB1 (select the gene name)
Genetic variants : HAPMAP1360
Genomic Variants (DGV)CPB1 [DGVbeta]
DECIPHER (Syndromes)3:148545588-148577972  ENSG00000153002
CONAN: Copy Number AnalysisCPB1 
Mutations
ICGC Data PortalCPB1 
TCGA Data PortalCPB1 
Broad Tumor PortalCPB1
OASIS PortalCPB1 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICCPB1  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDCPB1
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch CPB1
DgiDB (Drug Gene Interaction Database)CPB1
DoCM (Curated mutations)CPB1 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)CPB1 (select a term)
intoGenCPB1
Cancer3DCPB1(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM114852   
Orphanet
MedgenCPB1
Genetic Testing Registry CPB1
NextProtP15086 [Medical]
TSGene1360
GENETestsCPB1
Huge Navigator CPB1 [HugePedia]
snp3D : Map Gene to Disease1360
BioCentury BCIQCPB1
ClinGenCPB1
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD1360
Chemical/Pharm GKB GenePA26821
Clinical trialCPB1
Miscellaneous
canSAR (ICR)CPB1 (select the gene name)
Probes
Litterature
PubMed16 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineCPB1
EVEXCPB1
GoPubMedCPB1
iHOPCPB1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Fri Nov 18 19:34:36 CET 2016

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