Atlas of Genetics and Cytogenetics in Oncology and Haematology


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CPEB1 (cytoplasmic polyadenylation element binding protein 1)

Identity

Alias_symbol (synonym)FLJ13203
CPEB
Other aliasCPE-BP1
CPEB-1
h-CPEB
hCPEB-1
HGNC (Hugo) CPEB1
LocusID (NCBI) 64506
Atlas_Id 50810
Location 15q25.2  [Link to chromosome band 15q25]
Location_base_pair Starts at 82543201 and ends at 82571823 bp from pter ( according to hg38-Dec_2013)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)CPEB1   21744
Cards
Entrez_Gene (NCBI)CPEB1  64506  cytoplasmic polyadenylation element binding protein 1
AliasesCPE-BP1; CPEB; CPEB-1; h-CPEB; 
hCPEB-1
GeneCards (Weizmann)CPEB1
Ensembl hg19 (Hinxton)ENSG00000214575 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000214575 [Gene_View]  chr15:82543201-82571823 [Contig_View]  CPEB1 [Vega]
ICGC DataPortalENSG00000214575
TCGA cBioPortalCPEB1
AceView (NCBI)CPEB1
Genatlas (Paris)CPEB1
WikiGenes64506
SOURCE (Princeton)CPEB1
Genetics Home Reference (NIH)CPEB1
Genomic and cartography
GoldenPath hg38 (UCSC)CPEB1  -     chr15:82543201-82571823 -  15q25.2   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)CPEB1  -     15q25.2   [Description]    (hg19-Feb_2009)
EnsemblCPEB1 - 15q25.2 [CytoView hg19]  CPEB1 - 15q25.2 [CytoView hg38]
Mapping of homologs : NCBICPEB1 [Mapview hg19]  CPEB1 [Mapview hg38]
OMIM607342   
Gene and transcription
Genbank (Entrez)AF329402 AF329403 AK023265 AK294280 AK300105
RefSeq transcript (Entrez)NM_001079533 NM_001079534 NM_001079535 NM_001288819 NM_001288820 NM_030594
RefSeq genomic (Entrez)NC_000015 NC_018926 NT_187606
Consensus coding sequences : CCDS (NCBI)CPEB1
Cluster EST : UnigeneHs.547988 [ NCBI ]
CGAP (NCI)Hs.547988
Alternative Splicing GalleryENSG00000214575
Gene ExpressionCPEB1 [ NCBI-GEO ]   CPEB1 [ EBI - ARRAY_EXPRESS ]   CPEB1 [ SEEK ]   CPEB1 [ MEM ]
Gene Expression Viewer (FireBrowse)CPEB1 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)64506
GTEX Portal (Tissue expression)CPEB1
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9BZB8   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9BZB8  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9BZB8
Splice isoforms : SwissVarQ9BZB8
PhosPhoSitePlusQ9BZB8
Domaine pattern : Prosite (Expaxy)RRM (PS50102)   
Domains : Interpro (EBI)CEBP1_N    CEBP_ZZ    Nucleotide-bd_a/b_plait    RRM_dom   
Domain families : Pfam (Sanger)CEBP1_N (PF16368)    CEBP_ZZ (PF16366)    RRM_7 (PF16367)   
Domain families : Pfam (NCBI)pfam16368    pfam16366    pfam16367   
Conserved Domain (NCBI)CPEB1
DMDM Disease mutations64506
Blocks (Seattle)CPEB1
PDB (SRS)2M13    2MKE    2MKH    2MKK    2N1O   
PDB (PDBSum)2M13    2MKE    2MKH    2MKK    2N1O   
PDB (IMB)2M13    2MKE    2MKH    2MKK    2N1O   
PDB (RSDB)2M13    2MKE    2MKH    2MKK    2N1O   
Structural Biology KnowledgeBase2M13    2MKE    2MKH    2MKK    2N1O   
SCOP (Structural Classification of Proteins)2M13    2MKE    2MKH    2MKK    2N1O   
CATH (Classification of proteins structures)2M13    2MKE    2MKH    2MKK    2N1O   
SuperfamilyQ9BZB8
Human Protein AtlasENSG00000214575
Peptide AtlasQ9BZB8
HPRD09553
IPIIPI00816564   IPI01012387   IPI00097510   IPI00789449   IPI00816377   IPI00943218   IPI01011798   
Protein Interaction databases
DIP (DOE-UCLA)Q9BZB8
IntAct (EBI)Q9BZB8
FunCoupENSG00000214575
BioGRIDCPEB1
STRING (EMBL)CPEB1
ZODIACCPEB1
Ontologies - Pathways
QuickGOQ9BZB8
Ontology : AmiGOtranslation repressor activity, nucleic acid binding  translation repressor activity, nucleic acid binding  P-body  mRNA 3'-UTR binding  nucleus  nucleus  cytoplasm  cytoplasm  centrosome  mRNA processing  translation  translation factor activity, RNA binding  negative regulation of cell proliferation  positive regulation of neuron projection development  postsynaptic density  cell junction  positive regulation of cell migration  dendrite  growth cone  cellular response to insulin stimulus  mRNA 3'-UTR AU-rich region binding  neuron projection  ribosome binding  neuronal cell body  synapse  postsynaptic membrane  positive regulation of translation  metal ion binding  perinuclear region of cytoplasm  mRNA transport  positive regulation of nitric-oxide synthase biosynthetic process  cellular response to lipopolysaccharide  cellular response to amino acid stimulus  cellular response to hypoxia  messenger ribonucleoprotein complex  negative regulation of cytoplasmic translation  
Ontology : EGO-EBItranslation repressor activity, nucleic acid binding  translation repressor activity, nucleic acid binding  P-body  mRNA 3'-UTR binding  nucleus  nucleus  cytoplasm  cytoplasm  centrosome  mRNA processing  translation  translation factor activity, RNA binding  negative regulation of cell proliferation  positive regulation of neuron projection development  postsynaptic density  cell junction  positive regulation of cell migration  dendrite  growth cone  cellular response to insulin stimulus  mRNA 3'-UTR AU-rich region binding  neuron projection  ribosome binding  neuronal cell body  synapse  postsynaptic membrane  positive regulation of translation  metal ion binding  perinuclear region of cytoplasm  mRNA transport  positive regulation of nitric-oxide synthase biosynthetic process  cellular response to lipopolysaccharide  cellular response to amino acid stimulus  cellular response to hypoxia  messenger ribonucleoprotein complex  negative regulation of cytoplasmic translation  
Pathways : KEGGOocyte meiosis    Dorso-ventral axis formation    Progesterone-mediated oocyte maturation   
NDEx NetworkCPEB1
Atlas of Cancer Signalling NetworkCPEB1
Wikipedia pathwaysCPEB1
Orthology - Evolution
OrthoDB64506
GeneTree (enSembl)ENSG00000214575
Phylogenetic Trees/Animal Genes : TreeFamCPEB1
HOVERGENQ9BZB8
HOGENOMQ9BZB8
Homologs : HomoloGeneCPEB1
Homology/Alignments : Family Browser (UCSC)CPEB1
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerCPEB1 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)CPEB1
dbVarCPEB1
ClinVarCPEB1
1000_GenomesCPEB1 
Exome Variant ServerCPEB1
ExAC (Exome Aggregation Consortium)CPEB1 (select the gene name)
Genetic variants : HAPMAP64506
Genomic Variants (DGV)CPEB1 [DGVbeta]
DECIPHERCPEB1 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisCPEB1 
Mutations
ICGC Data PortalCPEB1 
TCGA Data PortalCPEB1 
Broad Tumor PortalCPEB1
OASIS PortalCPEB1 [ Somatic mutations - Copy number]
Mutations and Diseases : HGMDCPEB1
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch CPEB1
DgiDB (Drug Gene Interaction Database)CPEB1
DoCM (Curated mutations)CPEB1 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)CPEB1 (select a term)
intoGenCPEB1
Cancer3DCPEB1(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM607342   
Orphanet
MedgenCPEB1
Genetic Testing Registry CPEB1
NextProtQ9BZB8 [Medical]
TSGene64506
GENETestsCPEB1
Target ValidationCPEB1
Huge Navigator CPEB1 [HugePedia]
snp3D : Map Gene to Disease64506
BioCentury BCIQCPEB1
ClinGenCPEB1
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD64506
Chemical/Pharm GKB GenePA134929879
Clinical trialCPEB1
Miscellaneous
canSAR (ICR)CPEB1 (select the gene name)
Probes
Litterature
PubMed42 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineCPEB1
EVEXCPEB1
GoPubMedCPEB1
iHOPCPEB1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Wed Jun 7 12:29:23 CEST 2017

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