Atlas of Genetics and Cytogenetics in Oncology and Haematology


Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

X Y 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 NA

CPEB3 (cytoplasmic polyadenylation element binding protein 3)

Identity

Other alias-
HGNC (Hugo) CPEB3
LocusID (NCBI) 22849
Atlas_Id 56632
Location 10q23.32  [Link to chromosome band 10q23]
Location_base_pair Starts at 92048640 and ends at 92243279 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
CHCHD3 (7q32.3) / CPEB3 (10q23.32)CPEB3 (10q23.32) / CPEB3 (10q23.32)CPEB3 (10q23.32) / LY86-AS1 (6p25.1)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)CPEB3   21746
Cards
Entrez_Gene (NCBI)CPEB3  22849  cytoplasmic polyadenylation element binding protein 3
Aliases
GeneCards (Weizmann)CPEB3
Ensembl hg19 (Hinxton) [Gene_View]
Ensembl hg38 (Hinxton) [Gene_View]  chr10:92048640-92243279 [Contig_View]  CPEB3 [Vega]
TCGA cBioPortalCPEB3
AceView (NCBI)CPEB3
Genatlas (Paris)CPEB3
WikiGenes22849
SOURCE (Princeton)CPEB3
Genetics Home Reference (NIH)CPEB3
Genomic and cartography
GoldenPath hg38 (UCSC)CPEB3  -     chr10:92048640-92243279 -  10q23.32   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)CPEB3  -     10q23.32   [Description]    (hg19-Feb_2009)
EnsemblCPEB3 - 10q23.32 [CytoView hg19]  CPEB3 - 10q23.32 [CytoView hg38]
Mapping of homologs : NCBICPEB3 [Mapview hg19]  CPEB3 [Mapview hg38]
OMIM610606   
Gene and transcription
Genbank (Entrez)AB023157 AK127060 AK302576 BC036444 BU785463
RefSeq transcript (Entrez)NM_001178137 NM_014912
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)CPEB3
Cluster EST : UnigeneHs.701732 [ NCBI ]
CGAP (NCI)Hs.701732
Gene ExpressionCPEB3 [ NCBI-GEO ]   CPEB3 [ EBI - ARRAY_EXPRESS ]   CPEB3 [ SEEK ]   CPEB3 [ MEM ]
Gene Expression Viewer (FireBrowse)CPEB3 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)22849
GTEX Portal (Tissue expression)CPEB3
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ8NE35   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ8NE35  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ8NE35
Splice isoforms : SwissVarQ8NE35
PhosPhoSitePlusQ8NE35
Domaine pattern : Prosite (Expaxy)RRM (PS50102)   
Domains : Interpro (EBI)CEBP_ZZ    Nucleotide-bd_a/b_plait    RRM_dom   
Domain families : Pfam (Sanger)CEBP_ZZ (PF16366)    RRM_7 (PF16367)   
Domain families : Pfam (NCBI)pfam16366    pfam16367   
Domain families : Smart (EMBL)RRM (SM00360)  
Conserved Domain (NCBI)CPEB3
DMDM Disease mutations22849
Blocks (Seattle)CPEB3
PDB (SRS)2DNL    2RUG   
PDB (PDBSum)2DNL    2RUG   
PDB (IMB)2DNL    2RUG   
PDB (RSDB)2DNL    2RUG   
Structural Biology KnowledgeBase2DNL    2RUG   
SCOP (Structural Classification of Proteins)2DNL    2RUG   
CATH (Classification of proteins structures)2DNL    2RUG   
SuperfamilyQ8NE35
Peptide AtlasQ8NE35
IPIIPI00448595   IPI00401290   
Protein Interaction databases
DIP (DOE-UCLA)Q8NE35
IntAct (EBI)Q8NE35
BioGRIDCPEB3
STRING (EMBL)CPEB3
ZODIACCPEB3
Ontologies - Pathways
QuickGOQ8NE35
Ontology : AmiGOnegative regulation of transcription from RNA polymerase II promoter  translation repressor activity, nucleic acid binding  translation repressor activity, nucleic acid binding  RNA binding  mRNA 3'-UTR binding  mRNA 3'-UTR binding  protein binding  nucleus  cytoplasm  cytoplasm  translation  long-term memory  translation factor activity, RNA binding  translation factor activity, RNA binding  postsynaptic density  negative regulation of translation  CCR4-NOT complex  cell junction  dendrite  RNA stem-loop binding  mRNA 3'-UTR AU-rich region binding  neuron projection  neuron projection  ribosome binding  synapse  synapse  postsynaptic membrane  positive regulation of translation  regulation of synaptic plasticity  positive regulation of nuclear-transcribed mRNA poly(A) tail shortening  regulation of dendritic spine development  positive regulation of dendritic spine development  3'-UTR-mediated mRNA destabilization  cellular response to amino acid stimulus  cellular response to amino acid stimulus  apical dendrite  positive regulation of nuclear-transcribed mRNA catabolic process, deadenylation-dependent decay  negative regulation of cytoplasmic translational elongation  positive regulation of mRNA polyadenylation  messenger ribonucleoprotein complex  negative regulation of cytoplasmic translation  
Ontology : EGO-EBInegative regulation of transcription from RNA polymerase II promoter  translation repressor activity, nucleic acid binding  translation repressor activity, nucleic acid binding  RNA binding  mRNA 3'-UTR binding  mRNA 3'-UTR binding  protein binding  nucleus  cytoplasm  cytoplasm  translation  long-term memory  translation factor activity, RNA binding  translation factor activity, RNA binding  postsynaptic density  negative regulation of translation  CCR4-NOT complex  cell junction  dendrite  RNA stem-loop binding  mRNA 3'-UTR AU-rich region binding  neuron projection  neuron projection  ribosome binding  synapse  synapse  postsynaptic membrane  positive regulation of translation  regulation of synaptic plasticity  positive regulation of nuclear-transcribed mRNA poly(A) tail shortening  regulation of dendritic spine development  positive regulation of dendritic spine development  3'-UTR-mediated mRNA destabilization  cellular response to amino acid stimulus  cellular response to amino acid stimulus  apical dendrite  positive regulation of nuclear-transcribed mRNA catabolic process, deadenylation-dependent decay  negative regulation of cytoplasmic translational elongation  positive regulation of mRNA polyadenylation  messenger ribonucleoprotein complex  negative regulation of cytoplasmic translation  
NDEx NetworkCPEB3
Atlas of Cancer Signalling NetworkCPEB3
Wikipedia pathwaysCPEB3
Orthology - Evolution
OrthoDB22849
Phylogenetic Trees/Animal Genes : TreeFamCPEB3
HOVERGENQ8NE35
HOGENOMQ8NE35
Homologs : HomoloGeneCPEB3
Homology/Alignments : Family Browser (UCSC)CPEB3
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerCPEB3 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)CPEB3
dbVarCPEB3
ClinVarCPEB3
1000_GenomesCPEB3 
Exome Variant ServerCPEB3
ExAC (Exome Aggregation Consortium)CPEB3 (select the gene name)
Genetic variants : HAPMAP22849
Genomic Variants (DGV)CPEB3 [DGVbeta]
DECIPHERCPEB3 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisCPEB3 
Mutations
ICGC Data PortalCPEB3 
TCGA Data PortalCPEB3 
Broad Tumor PortalCPEB3
OASIS PortalCPEB3 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICCPEB3  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDCPEB3
BioMutasearch CPEB3
DgiDB (Drug Gene Interaction Database)CPEB3
DoCM (Curated mutations)CPEB3 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)CPEB3 (select a term)
intoGenCPEB3
Cancer3DCPEB3(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM610606   
Orphanet
MedgenCPEB3
Genetic Testing Registry CPEB3
NextProtQ8NE35 [Medical]
TSGene22849
GENETestsCPEB3
Target ValidationCPEB3
Huge Navigator CPEB3 [HugePedia]
snp3D : Map Gene to Disease22849
BioCentury BCIQCPEB3
ClinGenCPEB3
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD22849
Chemical/Pharm GKB GenePA134903478
Clinical trialCPEB3
Miscellaneous
canSAR (ICR)CPEB3 (select the gene name)
Probes
Litterature
PubMed20 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineCPEB3
EVEXCPEB3
GoPubMedCPEB3
iHOPCPEB3
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Tue Aug 1 16:58:30 CEST 2017

Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

For comments and suggestions or contributions, please contact us

jlhuret@AtlasGeneticsOncology.org.