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CPED1 (cadherin like and PC-esterase domain containing 1)

Identity

Alias_namesC7orf58
chromosome 7 open reading frame 58
cadherin-like and PC-esterase domain containing 1
Alias_symbol (synonym)FLJ21986
Other alias
HGNC (Hugo) CPED1
LocusID (NCBI) 79974
Atlas_Id 62052
Location 7q31.31  [Link to chromosome band 7q31]
Location_base_pair Starts at 120989391 and ends at 121261918 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
ATP6V1F (7q32.1) / CPED1 (7q31.31)ESYT2 (7q36.3) / CPED1 (7q31.31)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)CPED1   26159
Cards
Entrez_Gene (NCBI)CPED1  79974  cadherin like and PC-esterase domain containing 1
AliasesC7orf58
GeneCards (Weizmann)CPED1
Ensembl hg19 (Hinxton)ENSG00000106034 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000106034 [Gene_View]  chr7:120989391-121261918 [Contig_View]  CPED1 [Vega]
ICGC DataPortalENSG00000106034
TCGA cBioPortalCPED1
AceView (NCBI)CPED1
Genatlas (Paris)CPED1
WikiGenes79974
SOURCE (Princeton)CPED1
Genetics Home Reference (NIH)CPED1
Genomic and cartography
GoldenPath hg38 (UCSC)CPED1  -     chr7:120989391-121261918 +  7q31.31   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)CPED1  -     7q31.31   [Description]    (hg19-Feb_2009)
EnsemblCPED1 - 7q31.31 [CytoView hg19]  CPED1 - 7q31.31 [CytoView hg38]
Mapping of homologs : NCBICPED1 [Mapview hg19]  CPED1 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AK025639 AK055624 AK130323 AK225313 AK289978
RefSeq transcript (Entrez)NM_001105533 NM_024913
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)CPED1
Cluster EST : UnigeneHs.189652 [ NCBI ]
CGAP (NCI)Hs.189652
Alternative Splicing GalleryENSG00000106034
Gene ExpressionCPED1 [ NCBI-GEO ]   CPED1 [ EBI - ARRAY_EXPRESS ]   CPED1 [ SEEK ]   CPED1 [ MEM ]
Gene Expression Viewer (FireBrowse)CPED1 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)79974
GTEX Portal (Tissue expression)CPED1
Protein : pattern, domain, 3D structure
UniProt/SwissProtA4D0V7   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtA4D0V7  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProA4D0V7
Splice isoforms : SwissVarA4D0V7
PhosPhoSitePlusA4D0V7
Domains : Interpro (EBI)Cadherin-like_b_sandwich   
Domain families : Pfam (Sanger)Cadherin-like (PF12733)   
Domain families : Pfam (NCBI)pfam12733   
Conserved Domain (NCBI)CPED1
DMDM Disease mutations79974
Blocks (Seattle)CPED1
SuperfamilyA4D0V7
Human Protein AtlasENSG00000106034
Peptide AtlasA4D0V7
HPRD08647
IPIIPI00290995   IPI00412991   IPI00924528   IPI00927121   IPI00926905   IPI01011086   IPI00977891   
Protein Interaction databases
DIP (DOE-UCLA)A4D0V7
IntAct (EBI)A4D0V7
FunCoupENSG00000106034
BioGRIDCPED1
STRING (EMBL)CPED1
ZODIACCPED1
Ontologies - Pathways
QuickGOA4D0V7
Ontology : AmiGOendoplasmic reticulum  
Ontology : EGO-EBIendoplasmic reticulum  
NDEx NetworkCPED1
Atlas of Cancer Signalling NetworkCPED1
Wikipedia pathwaysCPED1
Orthology - Evolution
OrthoDB79974
GeneTree (enSembl)ENSG00000106034
Phylogenetic Trees/Animal Genes : TreeFamCPED1
HOVERGENA4D0V7
HOGENOMA4D0V7
Homologs : HomoloGeneCPED1
Homology/Alignments : Family Browser (UCSC)CPED1
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerCPED1 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)CPED1
dbVarCPED1
ClinVarCPED1
1000_GenomesCPED1 
Exome Variant ServerCPED1
ExAC (Exome Aggregation Consortium)CPED1 (select the gene name)
Genetic variants : HAPMAP79974
Genomic Variants (DGV)CPED1 [DGVbeta]
DECIPHERCPED1 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisCPED1 
Mutations
ICGC Data PortalCPED1 
TCGA Data PortalCPED1 
Broad Tumor PortalCPED1
OASIS PortalCPED1 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICCPED1  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDCPED1
BioMutasearch CPED1
DgiDB (Drug Gene Interaction Database)CPED1
DoCM (Curated mutations)CPED1 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)CPED1 (select a term)
intoGenCPED1
Cancer3DCPED1(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenCPED1
Genetic Testing Registry CPED1
NextProtA4D0V7 [Medical]
TSGene79974
GENETestsCPED1
Target ValidationCPED1
Huge Navigator CPED1 [HugePedia]
snp3D : Map Gene to Disease79974
BioCentury BCIQCPED1
ClinGenCPED1
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD79974
Chemical/Pharm GKB GenePA162380636
Clinical trialCPED1
Miscellaneous
canSAR (ICR)CPED1 (select the gene name)
Probes
Litterature
PubMed20 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineCPED1
EVEXCPED1
GoPubMedCPED1
iHOPCPED1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Wed Jun 7 15:44:24 CEST 2017

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