Atlas of Genetics and Cytogenetics in Oncology and Haematology


Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

X Y 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 NA

CPLANE2 (ciliogenesis and planar polarity effector 2)

Identity

Alias_namesC1orf89
chromosome 1 open reading frame 89
REM2 and RAB-like small GTPase 1
Alias_symbol (synonym)MGC10731
Other aliasRSG1
HGNC (Hugo) CPLANE2
LocusID (NCBI) 79363
Atlas_Id 56134
Location 1p36.13  [Link to chromosome band 1p36]
Location_base_pair Starts at 16231687 and ends at 16237164 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute


External links

Nomenclature
HGNC (Hugo)CPLANE2   28127
Cards
Entrez_Gene (NCBI)CPLANE2  79363  ciliogenesis and planar polarity effector 2
AliasesC1orf89; RSG1
GeneCards (Weizmann)CPLANE2
Ensembl hg19 (Hinxton)ENSG00000132881 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000132881 [Gene_View]  ENSG00000132881 [Sequence]  chr1:16231687-16237164 [Contig_View]  CPLANE2 [Vega]
ICGC DataPortalENSG00000132881
TCGA cBioPortalCPLANE2
AceView (NCBI)CPLANE2
Genatlas (Paris)CPLANE2
WikiGenes79363
SOURCE (Princeton)CPLANE2
Genetics Home Reference (NIH)CPLANE2
Genomic and cartography
GoldenPath hg38 (UCSC)CPLANE2  -     chr1:16231687-16237164 -  1p36.13   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)CPLANE2  -     1p36.13   [Description]    (hg19-Feb_2009)
EnsemblCPLANE2 - 1p36.13 [CytoView hg19]  CPLANE2 - 1p36.13 [CytoView hg38]
Mapping of homologs : NCBICPLANE2 [Mapview hg19]  CPLANE2 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AI744915 AL559024 BC002946 BC008702 BP214716
RefSeq transcript (Entrez)NM_030907
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)CPLANE2
Cluster EST : UnigeneHs.546430 [ NCBI ]
CGAP (NCI)Hs.546430
Alternative Splicing GalleryENSG00000132881
Gene ExpressionCPLANE2 [ NCBI-GEO ]   CPLANE2 [ EBI - ARRAY_EXPRESS ]   CPLANE2 [ SEEK ]   CPLANE2 [ MEM ]
Gene Expression Viewer (FireBrowse)CPLANE2 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)79363
GTEX Portal (Tissue expression)CPLANE2
Human Protein AtlasENSG00000132881-CPLANE2 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9BU20   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9BU20  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9BU20
Splice isoforms : SwissVarQ9BU20
PhosPhoSitePlusQ9BU20
Domains : Interpro (EBI)P-loop_NTPase    Small_GTPase   
Domain families : Pfam (Sanger)Ras (PF00071)   
Domain families : Pfam (NCBI)pfam00071   
Conserved Domain (NCBI)CPLANE2
DMDM Disease mutations79363
Blocks (Seattle)CPLANE2
SuperfamilyQ9BU20
Human Protein Atlas [tissue]ENSG00000132881-CPLANE2 [tissue]
Peptide AtlasQ9BU20
HPRD14399
IPIIPI00008416   IPI00748032   
Protein Interaction databases
DIP (DOE-UCLA)Q9BU20
IntAct (EBI)Q9BU20
FunCoupENSG00000132881
BioGRIDCPLANE2
STRING (EMBL)CPLANE2
ZODIACCPLANE2
Ontologies - Pathways
QuickGOQ9BU20
Ontology : AmiGOGTPase activity  protein binding  GTP binding  nucleoplasm  cytoplasm  exocytosis  protein transport  regulation of exocytosis  regulation of vesicle fusion  cellular protein localization  ciliary basal body  cilium assembly  
Ontology : EGO-EBIGTPase activity  protein binding  GTP binding  nucleoplasm  cytoplasm  exocytosis  protein transport  regulation of exocytosis  regulation of vesicle fusion  cellular protein localization  ciliary basal body  cilium assembly  
NDEx NetworkCPLANE2
Atlas of Cancer Signalling NetworkCPLANE2
Wikipedia pathwaysCPLANE2
Orthology - Evolution
OrthoDB79363
GeneTree (enSembl)ENSG00000132881
Phylogenetic Trees/Animal Genes : TreeFamCPLANE2
HOVERGENQ9BU20
HOGENOMQ9BU20
Homologs : HomoloGeneCPLANE2
Homology/Alignments : Family Browser (UCSC)CPLANE2
Gene fusions - Rearrangements
Fusion : QuiverCPLANE2
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerCPLANE2 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)CPLANE2
dbVarCPLANE2
ClinVarCPLANE2
1000_GenomesCPLANE2 
Exome Variant ServerCPLANE2
ExAC (Exome Aggregation Consortium)ENSG00000132881
GNOMAD BrowserENSG00000132881
Varsome BrowserCPLANE2
Genetic variants : HAPMAP79363
Genomic Variants (DGV)CPLANE2 [DGVbeta]
DECIPHERCPLANE2 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisCPLANE2 
Mutations
ICGC Data PortalCPLANE2 
TCGA Data PortalCPLANE2 
Broad Tumor PortalCPLANE2
OASIS PortalCPLANE2 [ Somatic mutations - Copy number]
Mutations and Diseases : HGMDCPLANE2
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch CPLANE2
DgiDB (Drug Gene Interaction Database)CPLANE2
DoCM (Curated mutations)CPLANE2 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)CPLANE2 (select a term)
intoGenCPLANE2
Cancer3DCPLANE2(select the gene name)
Impact of mutations[PolyPhen2] [Provean] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
DisGeNETCPLANE2
MedgenCPLANE2
Genetic Testing Registry CPLANE2
NextProtQ9BU20 [Medical]
TSGene79363
GENETestsCPLANE2
Target ValidationCPLANE2
Huge Navigator CPLANE2 [HugePedia]
snp3D : Map Gene to Disease79363
BioCentury BCIQCPLANE2
ClinGenCPLANE2
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD79363
Chemical/Pharm GKB GenePA142672473
Clinical trialCPLANE2
Miscellaneous
canSAR (ICR)CPLANE2 (select the gene name)
Probes
Litterature
PubMed10 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineCPLANE2
EVEXCPLANE2
GoPubMedCPLANE2
iHOPCPLANE2
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Tue Nov 6 10:59:54 CET 2018

Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

For comments and suggestions or contributions, please contact us

jlhuret@AtlasGeneticsOncology.org.