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CPLX4 (complexin 4)

Identity

Alias_symbol (synonym)CPX-IV
Other aliasCPXIV
HGNC (Hugo) CPLX4
LocusID (NCBI) 339302
Atlas_Id 62056
Location 18q21.32  [Link to chromosome band 18q21]
Location_base_pair Starts at 59295404 and ends at 59318649 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
SGIP1 (1p31.3) / CPLX4 (18q21.32)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)CPLX4   24330
Cards
Entrez_Gene (NCBI)CPLX4  339302  complexin 4
AliasesCPX-IV; CPXIV
GeneCards (Weizmann)CPLX4
Ensembl hg19 (Hinxton)ENSG00000166569 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000166569 [Gene_View]  chr18:59295404-59318649 [Contig_View]  CPLX4 [Vega]
ICGC DataPortalENSG00000166569
TCGA cBioPortalCPLX4
AceView (NCBI)CPLX4
Genatlas (Paris)CPLX4
WikiGenes339302
SOURCE (Princeton)CPLX4
Genetics Home Reference (NIH)CPLX4
Genomic and cartography
GoldenPath hg38 (UCSC)CPLX4  -     chr18:59295404-59318649 -  18q21.32   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)CPLX4  -     18q21.32   [Description]    (hg19-Feb_2009)
EnsemblCPLX4 - 18q21.32 [CytoView hg19]  CPLX4 - 18q21.32 [CytoView hg38]
Mapping of homologs : NCBICPLX4 [Mapview hg19]  CPLX4 [Mapview hg38]
OMIM609586   
Gene and transcription
Genbank (Entrez)AB593158 AK123184 AY286502 BC065562 BC106886
RefSeq transcript (Entrez)NM_181654
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)CPLX4
Cluster EST : UnigeneHs.449884 [ NCBI ]
CGAP (NCI)Hs.449884
Alternative Splicing GalleryENSG00000166569
Gene ExpressionCPLX4 [ NCBI-GEO ]   CPLX4 [ EBI - ARRAY_EXPRESS ]   CPLX4 [ SEEK ]   CPLX4 [ MEM ]
Gene Expression Viewer (FireBrowse)CPLX4 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)339302
GTEX Portal (Tissue expression)CPLX4
Human Protein AtlasENSG00000166569-CPLX4 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ7Z7G2   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ7Z7G2  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ7Z7G2
Splice isoforms : SwissVarQ7Z7G2
PhosPhoSitePlusQ7Z7G2
Domains : Interpro (EBI)Synaphin   
Domain families : Pfam (Sanger)Synaphin (PF05835)   
Domain families : Pfam (NCBI)pfam05835   
Conserved Domain (NCBI)CPLX4
DMDM Disease mutations339302
Blocks (Seattle)CPLX4
SuperfamilyQ7Z7G2
Human Protein Atlas [tissue]ENSG00000166569-CPLX4 [tissue]
Peptide AtlasQ7Z7G2
HPRD13091
IPIIPI00328317   
Protein Interaction databases
DIP (DOE-UCLA)Q7Z7G2
IntAct (EBI)Q7Z7G2
FunCoupENSG00000166569
BioGRIDCPLX4
STRING (EMBL)CPLX4
ZODIACCPLX4
Ontologies - Pathways
QuickGOQ7Z7G2
Ontology : AmiGOneurotransmitter transport  exocytosis  membrane  syntaxin binding  cell junction  synapse  regulation of neurotransmitter secretion  
Ontology : EGO-EBIneurotransmitter transport  exocytosis  membrane  syntaxin binding  cell junction  synapse  regulation of neurotransmitter secretion  
Pathways : KEGGSynaptic vesicle cycle   
NDEx NetworkCPLX4
Atlas of Cancer Signalling NetworkCPLX4
Wikipedia pathwaysCPLX4
Orthology - Evolution
OrthoDB339302
GeneTree (enSembl)ENSG00000166569
Phylogenetic Trees/Animal Genes : TreeFamCPLX4
HOVERGENQ7Z7G2
HOGENOMQ7Z7G2
Homologs : HomoloGeneCPLX4
Homology/Alignments : Family Browser (UCSC)CPLX4
Gene fusions - Rearrangements
Fusion: Tumor Portal CPLX4
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerCPLX4 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)CPLX4
dbVarCPLX4
ClinVarCPLX4
1000_GenomesCPLX4 
Exome Variant ServerCPLX4
ExAC (Exome Aggregation Consortium)ENSG00000166569
GNOMAD BrowserENSG00000166569
Genetic variants : HAPMAP339302
Genomic Variants (DGV)CPLX4 [DGVbeta]
DECIPHERCPLX4 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisCPLX4 
Mutations
ICGC Data PortalCPLX4 
TCGA Data PortalCPLX4 
Broad Tumor PortalCPLX4
OASIS PortalCPLX4 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICCPLX4  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDCPLX4
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch CPLX4
DgiDB (Drug Gene Interaction Database)CPLX4
DoCM (Curated mutations)PLZ4 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)CPLX4 (select a term)
intoGenCPLX4
Cancer3DCPLX4(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM609586   
Orphanet
MedgenCPLX4
Genetic Testing Registry CPLX4
NextProtQ7Z7G2 [Medical]
TSGene339302
GENETestsCPLX4
Target ValidationCPLX4
Huge Navigator CPLX4 [HugePedia]
snp3D : Map Gene to Disease339302
BioCentury BCIQCPLX4
ClinGenCPLX4
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD339302
Chemical/Pharm GKB GenePA134902350
Clinical trialCPLX4
Miscellaneous
canSAR (ICR)CPLX4 (select the gene name)
Probes
Litterature
PubMed6 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineCPLX4
EVEXCPLX4
GoPubMedCPLX4
iHOPCPLX4
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Thu Nov 9 11:43:17 CET 2017

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