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CPN1 (carboxypeptidase N subunit 1)

Identity

Alias_namescarboxypeptidase N, polypeptide 1, 50kD
carboxypeptidase N, polypeptide 1
Other aliasCPN
SCPN
HGNC (Hugo) CPN1
LocusID (NCBI) 1369
Atlas_Id 47373
Location 10q24.2  [Link to chromosome band 10q24]
Location_base_pair Starts at 100042308 and ends at 100081885 bp from pter ( according to hg38-Dec_2013)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)CPN1   2312
Cards
Entrez_Gene (NCBI)CPN1  1369  carboxypeptidase N subunit 1
AliasesCPN; SCPN
GeneCards (Weizmann)CPN1
Ensembl hg19 (Hinxton)ENSG00000120054 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000120054 [Gene_View]  chr10:100042308-100081885 [Contig_View]  CPN1 [Vega]
ICGC DataPortalENSG00000120054
TCGA cBioPortalCPN1
AceView (NCBI)CPN1
Genatlas (Paris)CPN1
WikiGenes1369
SOURCE (Princeton)CPN1
Genetics Home Reference (NIH)CPN1
Genomic and cartography
GoldenPath hg38 (UCSC)CPN1  -     chr10:100042308-100081885 -  10q24.2   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)CPN1  -     10q24.2   [Description]    (hg19-Feb_2009)
EnsemblCPN1 - 10q24.2 [CytoView hg19]  CPN1 - 10q24.2 [CytoView hg38]
Mapping of homologs : NCBICPN1 [Mapview hg19]  CPN1 [Mapview hg38]
OMIM212070   603103   
Gene and transcription
Genbank (Entrez)AK313972 AW950687 BC027897 DQ892051 DQ895244
RefSeq transcript (Entrez)NM_001308
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)CPN1
Cluster EST : UnigeneHs.2246 [ NCBI ]
CGAP (NCI)Hs.2246
Alternative Splicing GalleryENSG00000120054
Gene ExpressionCPN1 [ NCBI-GEO ]   CPN1 [ EBI - ARRAY_EXPRESS ]   CPN1 [ SEEK ]   CPN1 [ MEM ]
Gene Expression Viewer (FireBrowse)CPN1 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)1369
GTEX Portal (Tissue expression)CPN1
Protein : pattern, domain, 3D structure
UniProt/SwissProtP15169   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtP15169  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProP15169
Splice isoforms : SwissVarP15169
Catalytic activity : Enzyme3.4.17.3 [ Enzyme-Expasy ]   3.4.17.33.4.17.3 [ IntEnz-EBI ]   3.4.17.3 [ BRENDA ]   3.4.17.3 [ KEGG ]   
PhosPhoSitePlusP15169
Domaine pattern : Prosite (Expaxy)CARBOXYPEPT_ZN_1 (PS00132)    CARBOXYPEPT_ZN_2 (PS00133)   
Domains : Interpro (EBI)CarboxyPept-like_regulatory    CarboxyPept_regulatory_dom    CPN1    Peptidase_M14   
Domain families : Pfam (Sanger)Peptidase_M14 (PF00246)   
Domain families : Pfam (NCBI)pfam00246   
Domain families : Smart (EMBL)Zn_pept (SM00631)  
Conserved Domain (NCBI)CPN1
DMDM Disease mutations1369
Blocks (Seattle)CPN1
PDB (SRS)2NSM   
PDB (PDBSum)2NSM   
PDB (IMB)2NSM   
PDB (RSDB)2NSM   
Structural Biology KnowledgeBase2NSM   
SCOP (Structural Classification of Proteins)2NSM   
CATH (Classification of proteins structures)2NSM   
SuperfamilyP15169
Human Protein AtlasENSG00000120054
Peptide AtlasP15169
HPRD09120
IPIIPI00010295   IPI00641144   
Protein Interaction databases
DIP (DOE-UCLA)P15169
IntAct (EBI)P15169
FunCoupENSG00000120054
BioGRIDCPN1
STRING (EMBL)CPN1
ZODIACCPN1
Ontologies - Pathways
QuickGOP15169
Ontology : AmiGOmetallocarboxypeptidase activity  extracellular space  Golgi apparatus  zinc ion binding  bradykinin catabolic process  insulin processing  secretory granule  neuronal cell body  response to glucocorticoid  synaptic membrane  
Ontology : EGO-EBImetallocarboxypeptidase activity  extracellular space  Golgi apparatus  zinc ion binding  bradykinin catabolic process  insulin processing  secretory granule  neuronal cell body  response to glucocorticoid  synaptic membrane  
NDEx NetworkCPN1
Atlas of Cancer Signalling NetworkCPN1
Wikipedia pathwaysCPN1
Orthology - Evolution
OrthoDB1369
GeneTree (enSembl)ENSG00000120054
Phylogenetic Trees/Animal Genes : TreeFamCPN1
HOVERGENP15169
HOGENOMP15169
Homologs : HomoloGeneCPN1
Homology/Alignments : Family Browser (UCSC)CPN1
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerCPN1 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)CPN1
dbVarCPN1
ClinVarCPN1
1000_GenomesCPN1 
Exome Variant ServerCPN1
ExAC (Exome Aggregation Consortium)CPN1 (select the gene name)
Genetic variants : HAPMAP1369
Genomic Variants (DGV)CPN1 [DGVbeta]
DECIPHERCPN1 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisCPN1 
Mutations
ICGC Data PortalCPN1 
TCGA Data PortalCPN1 
Broad Tumor PortalCPN1
OASIS PortalCPN1 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICCPN1  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDCPN1
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch CPN1
DgiDB (Drug Gene Interaction Database)CPN1
DoCM (Curated mutations)CPN1 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)CPN1 (select a term)
intoGenCPN1
Cancer3DCPN1(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM212070    603103   
Orphanet
MedgenCPN1
Genetic Testing Registry CPN1
NextProtP15169 [Medical]
TSGene1369
GENETestsCPN1
Target ValidationCPN1
Huge Navigator CPN1 [HugePedia]
snp3D : Map Gene to Disease1369
BioCentury BCIQCPN1
ClinGenCPN1
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD1369
Chemical/Pharm GKB GenePA26829
Clinical trialCPN1
Miscellaneous
canSAR (ICR)CPN1 (select the gene name)
Probes
Litterature
PubMed25 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineCPN1
EVEXCPN1
GoPubMedCPN1
iHOPCPN1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Wed Jun 7 12:29:24 CEST 2017

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