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CPN2 (carboxypeptidase N subunit 2)

Identity

Other aliasACBP
HGNC (Hugo) CPN2
LocusID (NCBI) 1370
Atlas_Id 56993
Location 3q29  [Link to chromosome band 3q29]
Location_base_pair Starts at 194339765 and ends at 194351328 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)CPN2   2313
Cards
Entrez_Gene (NCBI)CPN2  1370  carboxypeptidase N subunit 2
AliasesACBP
GeneCards (Weizmann)CPN2
Ensembl hg19 (Hinxton) [Gene_View]
Ensembl hg38 (Hinxton) [Gene_View]  chr3:194339765-194351328 [Contig_View]  CPN2 [Vega]
TCGA cBioPortalCPN2
AceView (NCBI)CPN2
Genatlas (Paris)CPN2
WikiGenes1370
SOURCE (Princeton)CPN2
Genetics Home Reference (NIH)CPN2
Genomic and cartography
GoldenPath hg38 (UCSC)CPN2  -     chr3:194339765-194351328 -  3q29   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)CPN2  -     3q29   [Description]    (hg19-Feb_2009)
EnsemblCPN2 - 3q29 [CytoView hg19]  CPN2 - 3q29 [CytoView hg38]
Mapping of homologs : NCBICPN2 [Mapview hg19]  CPN2 [Mapview hg38]
OMIM603104   
Gene and transcription
Genbank (Entrez)BC031569 BC042334 BC137398 BC137403 BX951477
RefSeq transcript (Entrez)NM_001080513 NM_001291988 NM_001309
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)CPN2
Cluster EST : UnigeneHs.528368 [ NCBI ]
CGAP (NCI)Hs.528368
Gene ExpressionCPN2 [ NCBI-GEO ]   CPN2 [ EBI - ARRAY_EXPRESS ]   CPN2 [ SEEK ]   CPN2 [ MEM ]
Gene Expression Viewer (FireBrowse)CPN2 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)1370
GTEX Portal (Tissue expression)CPN2
Protein : pattern, domain, 3D structure
UniProt/SwissProtP22792   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtP22792  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProP22792
Splice isoforms : SwissVarP22792
PhosPhoSitePlusP22792
Domaine pattern : Prosite (Expaxy)LRR (PS51450)   
Domains : Interpro (EBI)Cys-rich_flank_reg_C    L_dom-like    Leu-rich_rpt    Leu-rich_rpt_typical-subtyp    LRRNT   
Domain families : Pfam (Sanger)LRR_8 (PF13855)   
Domain families : Pfam (NCBI)pfam13855   
Domain families : Smart (EMBL)LRR_TYP (SM00369)  LRRCT (SM00082)  LRRNT (SM00013)  
Conserved Domain (NCBI)CPN2
DMDM Disease mutations1370
Blocks (Seattle)CPN2
SuperfamilyP22792
Peptide AtlasP22792
IPIIPI00479116   
Protein Interaction databases
DIP (DOE-UCLA)P22792
IntAct (EBI)P22792
BioGRIDCPN2
STRING (EMBL)CPN2
ZODIACCPN2
Ontologies - Pathways
QuickGOP22792
Ontology : AmiGOmetallocarboxypeptidase activity  extracellular region  extracellular region  proteolysis  enzyme regulator activity  regulation of complement activation  regulation of catalytic activity  protein stabilization  extracellular exosome  blood microparticle  
Ontology : EGO-EBImetallocarboxypeptidase activity  extracellular region  extracellular region  proteolysis  enzyme regulator activity  regulation of complement activation  regulation of catalytic activity  protein stabilization  extracellular exosome  blood microparticle  
NDEx NetworkCPN2
Atlas of Cancer Signalling NetworkCPN2
Wikipedia pathwaysCPN2
Orthology - Evolution
OrthoDB1370
Phylogenetic Trees/Animal Genes : TreeFamCPN2
HOVERGENP22792
HOGENOMP22792
Homologs : HomoloGeneCPN2
Homology/Alignments : Family Browser (UCSC)CPN2
Gene fusions - Rearrangements
Fusion: Tumor Portal CPN2
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerCPN2 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)CPN2
dbVarCPN2
ClinVarCPN2
1000_GenomesCPN2 
Exome Variant ServerCPN2
ExAC (Exome Aggregation Consortium)
Genetic variants : HAPMAP1370
Genomic Variants (DGV)CPN2 [DGVbeta]
DECIPHERCPN2 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisCPN2 
Mutations
ICGC Data PortalCPN2 
TCGA Data PortalCPN2 
Broad Tumor PortalCPN2
OASIS PortalCPN2 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICCPN2  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDCPN2
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch CPN2
DgiDB (Drug Gene Interaction Database)CPN2
DoCM (Curated mutations)CPN2 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)CPN2 (select a term)
intoGenCPN2
Cancer3DCPN2(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM603104   
Orphanet
MedgenCPN2
Genetic Testing Registry CPN2
NextProtP22792 [Medical]
TSGene1370
GENETestsCPN2
Target ValidationCPN2
Huge Navigator CPN2 [HugePedia]
snp3D : Map Gene to Disease1370
BioCentury BCIQCPN2
ClinGenCPN2
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD1370
Chemical/Pharm GKB GenePA26830
Clinical trialCPN2
Miscellaneous
canSAR (ICR)CPN2 (select the gene name)
Probes
Litterature
PubMed17 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineCPN2
EVEXCPN2
GoPubMedCPN2
iHOPCPN2
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Thu Nov 9 12:45:45 CET 2017

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