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CPNE2 (copine 2)

Identity

Alias_namescopine II
Alias_symbol (synonym)CPN2
Other aliasCOPN2
HGNC (Hugo) CPNE2
LocusID (NCBI) 221184
Atlas_Id 54232
Location 16q13  [Link to chromosome band 16q13]
Location_base_pair Starts at 57126455 and ends at 57181878 bp from pter ( according to hg19-Feb_2009)
Fusion genes
(updated 2016)
CPNE2 (16q13) / CPNE2 (16q13)CPNE2 (16q13) / SORT1 (1p13.3)PPP2R2D (10q26.3) / CPNE2 (16q13)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)CPNE2   2315
Cards
Entrez_Gene (NCBI)CPNE2  221184  copine 2
AliasesCOPN2; CPN2
GeneCards (Weizmann)CPNE2
Ensembl hg19 (Hinxton)ENSG00000140848 [Gene_View]  chr16:57126455-57181878 [Contig_View]  CPNE2 [Vega]
Ensembl hg38 (Hinxton)ENSG00000140848 [Gene_View]  chr16:57126455-57181878 [Contig_View]  CPNE2 [Vega]
ICGC DataPortalENSG00000140848
TCGA cBioPortalCPNE2
AceView (NCBI)CPNE2
Genatlas (Paris)CPNE2
WikiGenes221184
SOURCE (Princeton)CPNE2
Genetics Home Reference (NIH)CPNE2
Genomic and cartography
GoldenPath hg19 (UCSC)CPNE2  -     chr16:57126455-57181878 +  16q13   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)CPNE2  -     16q13   [Description]    (hg38-Dec_2013)
EnsemblCPNE2 - 16q13 [CytoView hg19]  CPNE2 - 16q13 [CytoView hg38]
Mapping of homologs : NCBICPNE2 [Mapview hg19]  CPNE2 [Mapview hg38]
OMIM604206   
Gene and transcription
Genbank (Entrez)AF492484 AK094867 AK126138 AK292269 AK315394
RefSeq transcript (Entrez)NM_152727
RefSeq genomic (Entrez)NC_000016 NC_018927 NT_010498 NW_004929402
Consensus coding sequences : CCDS (NCBI)CPNE2
Cluster EST : UnigeneHs.736510 [ NCBI ]
CGAP (NCI)Hs.736510
Alternative Splicing GalleryENSG00000140848
Gene ExpressionCPNE2 [ NCBI-GEO ]   CPNE2 [ EBI - ARRAY_EXPRESS ]   CPNE2 [ SEEK ]   CPNE2 [ MEM ]
Gene Expression Viewer (FireBrowse)CPNE2 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)221184
GTEX Portal (Tissue expression)CPNE2
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ96FN4   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ96FN4  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ96FN4
Splice isoforms : SwissVarQ96FN4
PhosPhoSitePlusQ96FN4
Domaine pattern : Prosite (Expaxy)C2 (PS50004)   
Domains : Interpro (EBI)C2_dom    Copine    VWF_A   
Domain families : Pfam (Sanger)C2 (PF00168)    Copine (PF07002)   
Domain families : Pfam (NCBI)pfam00168    pfam07002   
Domain families : Smart (EMBL)C2 (SM00239)  VWA (SM00327)  
Conserved Domain (NCBI)CPNE2
DMDM Disease mutations221184
Blocks (Seattle)CPNE2
SuperfamilyQ96FN4
Human Protein AtlasENSG00000140848
Peptide AtlasQ96FN4
HPRD05015
IPIIPI01015462   IPI00645310   
Protein Interaction databases
DIP (DOE-UCLA)Q96FN4
IntAct (EBI)Q96FN4
FunCoupENSG00000140848
BioGRIDCPNE2
STRING (EMBL)CPNE2
ZODIACCPNE2
Ontologies - Pathways
QuickGOQ96FN4
Ontology : AmiGOprotein binding  nucleus  cytoplasm  plasma membrane  extracellular exosome  cellular response to calcium ion  
Ontology : EGO-EBIprotein binding  nucleus  cytoplasm  plasma membrane  extracellular exosome  cellular response to calcium ion  
NDEx NetworkCPNE2
Atlas of Cancer Signalling NetworkCPNE2
Wikipedia pathwaysCPNE2
Orthology - Evolution
OrthoDB221184
GeneTree (enSembl)ENSG00000140848
Phylogenetic Trees/Animal Genes : TreeFamCPNE2
HOVERGENQ96FN4
HOGENOMQ96FN4
Homologs : HomoloGeneCPNE2
Homology/Alignments : Family Browser (UCSC)CPNE2
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerCPNE2 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)CPNE2
dbVarCPNE2
ClinVarCPNE2
1000_GenomesCPNE2 
Exome Variant ServerCPNE2
ExAC (Exome Aggregation Consortium)CPNE2 (select the gene name)
Genetic variants : HAPMAP221184
Genomic Variants (DGV)CPNE2 [DGVbeta]
DECIPHER (Syndromes)16:57126455-57181878  ENSG00000140848
CONAN: Copy Number AnalysisCPNE2 
Mutations
ICGC Data PortalCPNE2 
TCGA Data PortalCPNE2 
Broad Tumor PortalCPNE2
OASIS PortalCPNE2 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICCPNE2  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDCPNE2
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch CPNE2
DgiDB (Drug Gene Interaction Database)CPNE2
DoCM (Curated mutations)CPNE2 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)CPNE2 (select a term)
intoGenCPNE2
Cancer3DCPNE2(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM604206   
Orphanet
MedgenCPNE2
Genetic Testing Registry CPNE2
NextProtQ96FN4 [Medical]
TSGene221184
GENETestsCPNE2
Huge Navigator CPNE2 [HugePedia]
snp3D : Map Gene to Disease221184
BioCentury BCIQCPNE2
ClinGenCPNE2
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD221184
Chemical/Pharm GKB GenePA26832
Clinical trialCPNE2
Miscellaneous
canSAR (ICR)CPNE2 (select the gene name)
Probes
Litterature
PubMed22 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineCPNE2
EVEXCPNE2
GoPubMedCPNE2
iHOPCPNE2
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Mar 14 13:01:33 CET 2017

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