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CPNE3 (copine 3)

Identity

Alias_namescopine III
Other aliasCPN3
PRO1071
HGNC (Hugo) CPNE3
LocusID (NCBI) 8895
Atlas_Id 40139
Location 8q21.3  [Link to chromosome band 8q21]
Location_base_pair Starts at 87526656 and ends at 87573726 bp from pter ( according to hg19-Feb_2009)
Fusion genes
(updated 2016)
IFI27 (14q32.12) / CPNE3 (8q21.3)STAT5B (17q21.2) / CPNE3 (8q21.3)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)CPNE3   2316
Cards
Entrez_Gene (NCBI)CPNE3  8895  copine 3
AliasesCPN3; PRO1071
GeneCards (Weizmann)CPNE3
Ensembl hg19 (Hinxton)ENSG00000085719 [Gene_View]  chr8:87526656-87573726 [Contig_View]  CPNE3 [Vega]
Ensembl hg38 (Hinxton)ENSG00000085719 [Gene_View]  chr8:87526656-87573726 [Contig_View]  CPNE3 [Vega]
ICGC DataPortalENSG00000085719
TCGA cBioPortalCPNE3
AceView (NCBI)CPNE3
Genatlas (Paris)CPNE3
WikiGenes8895
SOURCE (Princeton)CPNE3
Genetics Home Reference (NIH)CPNE3
Genomic and cartography
GoldenPath hg19 (UCSC)CPNE3  -     chr8:87526656-87573726 +  8q21.3   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)CPNE3  -     8q21.3   [Description]    (hg38-Dec_2013)
EnsemblCPNE3 - 8q21.3 [CytoView hg19]  CPNE3 - 8q21.3 [CytoView hg38]
Mapping of homologs : NCBICPNE3 [Mapview hg19]  CPNE3 [Mapview hg38]
OMIM604207   
Gene and transcription
Genbank (Entrez)AB014536 AF077226 AF116654 AI031907 AK025275
RefSeq transcript (Entrez)NM_003909
RefSeq genomic (Entrez)NC_000008 NC_018919 NT_008046 NW_004929340
Consensus coding sequences : CCDS (NCBI)CPNE3
Cluster EST : UnigeneHs.191219 [ NCBI ]
CGAP (NCI)Hs.191219
Alternative Splicing GalleryENSG00000085719
Gene ExpressionCPNE3 [ NCBI-GEO ]   CPNE3 [ EBI - ARRAY_EXPRESS ]   CPNE3 [ SEEK ]   CPNE3 [ MEM ]
Gene Expression Viewer (FireBrowse)CPNE3 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)8895
GTEX Portal (Tissue expression)CPNE3
Protein : pattern, domain, 3D structure
UniProt/SwissProtO75131   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtO75131  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProO75131
Splice isoforms : SwissVarO75131
PhosPhoSitePlusO75131
Domaine pattern : Prosite (Expaxy)C2 (PS50004)   
Domains : Interpro (EBI)C2_dom    Copine    VWF_A   
Domain families : Pfam (Sanger)C2 (PF00168)    Copine (PF07002)   
Domain families : Pfam (NCBI)pfam00168    pfam07002   
Domain families : Smart (EMBL)C2 (SM00239)  VWA (SM00327)  
Conserved Domain (NCBI)CPNE3
DMDM Disease mutations8895
Blocks (Seattle)CPNE3
SuperfamilyO75131
Human Protein AtlasENSG00000085719
Peptide AtlasO75131
HPRD05016
IPIIPI00024403   IPI00383364   IPI00975515   IPI00984177   IPI00974148   IPI00983550   IPI00981530   IPI00982819   IPI00982238   
Protein Interaction databases
DIP (DOE-UCLA)O75131
IntAct (EBI)O75131
FunCoupENSG00000085719
BioGRIDCPNE3
STRING (EMBL)CPNE3
ZODIACCPNE3
Ontologies - Pathways
QuickGOO75131
Ontology : AmiGOprotein serine/threonine kinase activity  transporter activity  protein binding  calcium-dependent phospholipid binding  calcium-dependent phospholipid binding  nucleus  cytoplasm  cytoplasm  cytosol  plasma membrane  plasma membrane  focal adhesion  protein phosphorylation  lipid metabolic process  vesicle-mediated transport  cell junction  positive regulation of cell migration  receptor tyrosine kinase binding  ERBB2 signaling pathway  poly(A) RNA binding  glycerophospholipid biosynthetic process  calcium-dependent protein binding  extracellular exosome  cellular response to calcium ion  cellular response to growth factor stimulus  
Ontology : EGO-EBIprotein serine/threonine kinase activity  transporter activity  protein binding  calcium-dependent phospholipid binding  calcium-dependent phospholipid binding  nucleus  cytoplasm  cytoplasm  cytosol  plasma membrane  plasma membrane  focal adhesion  protein phosphorylation  lipid metabolic process  vesicle-mediated transport  cell junction  positive regulation of cell migration  receptor tyrosine kinase binding  ERBB2 signaling pathway  poly(A) RNA binding  glycerophospholipid biosynthetic process  calcium-dependent protein binding  extracellular exosome  cellular response to calcium ion  cellular response to growth factor stimulus  
NDEx NetworkCPNE3
Atlas of Cancer Signalling NetworkCPNE3
Wikipedia pathwaysCPNE3
Orthology - Evolution
OrthoDB8895
GeneTree (enSembl)ENSG00000085719
Phylogenetic Trees/Animal Genes : TreeFamCPNE3
HOVERGENO75131
HOGENOMO75131
Homologs : HomoloGeneCPNE3
Homology/Alignments : Family Browser (UCSC)CPNE3
Gene fusions - Rearrangements
Fusion : MitelmanIFI27/CPNE3 [14q32.12/8q21.3]  [t(8;14)(q21;q32)]  
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerCPNE3 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)CPNE3
dbVarCPNE3
ClinVarCPNE3
1000_GenomesCPNE3 
Exome Variant ServerCPNE3
ExAC (Exome Aggregation Consortium)CPNE3 (select the gene name)
Genetic variants : HAPMAP8895
Genomic Variants (DGV)CPNE3 [DGVbeta]
DECIPHER (Syndromes)8:87526656-87573726  ENSG00000085719
CONAN: Copy Number AnalysisCPNE3 
Mutations
ICGC Data PortalCPNE3 
TCGA Data PortalCPNE3 
Broad Tumor PortalCPNE3
OASIS PortalCPNE3 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICCPNE3  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDCPNE3
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch CPNE3
DgiDB (Drug Gene Interaction Database)CPNE3
DoCM (Curated mutations)CPNE3 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)CPNE3 (select a term)
intoGenCPNE3
Cancer3DCPNE3(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM604207   
Orphanet
MedgenCPNE3
Genetic Testing Registry CPNE3
NextProtO75131 [Medical]
TSGene8895
GENETestsCPNE3
Huge Navigator CPNE3 [HugePedia]
snp3D : Map Gene to Disease8895
BioCentury BCIQCPNE3
ClinGenCPNE3
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD8895
Chemical/Pharm GKB GenePA26833
Clinical trialCPNE3
Miscellaneous
canSAR (ICR)CPNE3 (select the gene name)
Probes
Litterature
PubMed31 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineCPNE3
EVEXCPNE3
GoPubMedCPNE3
iHOPCPNE3
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Thu Mar 30 14:57:27 CEST 2017

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